Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_064450 19 869 XP_005273257 19 869 NP_973730 17 2528 NP_001974 17 2528 NP_001159521 17 2528 XP_005258694 17 2528 XP_005258693 17 2528 XP_005258692 17 2528 XP_005258691 17 2528 NP_775752 17 4312 XP_005259550 17 4312 NP_068570 16 5631 NP_851564 16 5631 NP_851565 16 5631 NP_056078 16 7355 NP_006786 16 7355 NP_001167587 16 7355 NP_001167588 16 7355 NP_001269373 16 7355 NP_038476 16 7355 NP_872589 16 7355 NP_001269374 16 7355 XP_005254315 16 7355 XP_005254314 16 7355 XP_006720509 16 7355 XP_005254313 16 7355 XP_005254312 16 7355 XP_006718487 16 7355 NP_008941 15 9605 NP_001278405 15 9605 NP_775267 15 9605 NP_775268 15 9605 NP_775266 15 9605 NP_004094 15 9605 NP_001009923 15 9605 NP_001163801 15 9605 XP_006725362 15 9605 XP_006721713 15 9605 XP_005273505 15 9605 XP_005273504 15 9605 NP_001073937 15 9605>NP_064450 Length = 1722 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SLIVSPRR 8 SLIVSPRR Sbjct: 786 SLIVSPRR 793>XP_005273257 Length = 1726 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SLIVSPRR 8 SLIVSPRR Sbjct: 790 SLIVSPRR 797>NP_973730 Length = 323 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLIVSPRRK 9 S+IVSPR++ Sbjct: 100 SIIVSPRQR 108>NP_001974 Length = 297 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLIVSPRRK 9 S+IVSPR++ Sbjct: 100 SIIVSPRQR 108>NP_001159521 Length = 273 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLIVSPRRK 9 S+IVSPR++ Sbjct: 100 SIIVSPRQR 108>XP_005258694 Length = 299 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLIVSPRRK 9 S+IVSPR++ Sbjct: 100 SIIVSPRQR 108>XP_005258693 Length = 323 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLIVSPRRK 9 S+IVSPR++ Sbjct: 100 SIIVSPRQR 108>XP_005258692 Length = 323 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLIVSPRRK 9 S+IVSPR++ Sbjct: 100 SIIVSPRQR 108>XP_005258691 Length = 323 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLIVSPRRK 9 S+IVSPR++ Sbjct: 100 SIIVSPRQR 108>NP_775752 Length = 679 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLIVSPRRK 9 SLI +PRR+ Sbjct: 335 SLITAPRRE 343>XP_005259550 Length = 666 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SLIVSPRRK 9 SLI +PRR+ Sbjct: 335 SLITAPRRE 343>NP_068570 Length = 538 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VSPRRK 9 VSPRRK Sbjct: 169 VSPRRK 174>NP_851564 Length = 538 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VSPRRK 9 VSPRRK Sbjct: 169 VSPRRK 174>NP_851565 Length = 560 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VSPRRK 9 VSPRRK Sbjct: 191 VSPRRK 196>NP_056078 Length = 3036 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LIVSPRRK 9 L+V PRR+ Sbjct: 2391 LVVKPRRQ 2398>NP_006786 Length = 534 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 +L+V PRR Sbjct: 113 ALVVDPRR 120>NP_001167587 Length = 3037 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LIVSPRRK 9 L+V PRR+ Sbjct: 2392 LVVKPRRQ 2399>NP_001167588 Length = 2400 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LIVSPRRK 9 L+V PRR+ Sbjct: 1755 LVVKPRRQ 1762>NP_001269373 Length = 534 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 +L+V PRR Sbjct: 113 ALVVDPRR 120>NP_038476 Length = 1556 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IVSPRRK 9 ++SPRRK Sbjct: 1351 LLSPRRK 1357>NP_872589 Length = 1524 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IVSPRRK 9 ++SPRRK Sbjct: 1319 LLSPRRK 1325>NP_001269374 Length = 548 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 +L+V PRR Sbjct: 127 ALVVDPRR 134>XP_005254315 Length = 2576 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LIVSPRRK 9 L+V PRR+ Sbjct: 2392 LVVKPRRQ 2399>XP_005254314 Length = 2605 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LIVSPRRK 9 L+V PRR+ Sbjct: 2392 LVVKPRRQ 2399>XP_006720509 Length = 2646 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LIVSPRRK 9 L+V PRR+ Sbjct: 2392 LVVKPRRQ 2399>XP_005254313 Length = 3057 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LIVSPRRK 9 L+V PRR+ Sbjct: 2391 LVVKPRRQ 2398>XP_005254312 Length = 3058 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LIVSPRRK 9 L+V PRR+ Sbjct: 2392 LVVKPRRQ 2399>XP_006718487 Length = 534 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 +L+V PRR Sbjct: 113 ALVVDPRR 120>NP_008941 Length = 599 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLIVSPRRK 9 +LI+SP R+ Sbjct: 237 ALIISPTRE 245>NP_001278405 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLIVSPRRK 9 +LI+SP R+ Sbjct: 129 ALIISPTRE 137>NP_775267 Length = 967 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 SLI+ PR+ Sbjct: 361 SLIIHPRK 368>NP_775268 Length = 1009 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 SLI+ PR+ Sbjct: 361 SLIIHPRK 368>NP_775266 Length = 1009 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 SLI+ PR+ Sbjct: 361 SLIIHPRK 368>NP_004094 Length = 1009 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 SLI+ PR+ Sbjct: 361 SLIIHPRK 368>NP_001009923 Length = 183 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SLIVSPR 7 SL++SPR Sbjct: 25 SLVLSPR 31>NP_001163801 Length = 199 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LIVSPRRK 9 + +SPRRK Sbjct: 44 ITLSPRRK 51>XP_006725362 Length = 413 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLIVSPRRK 9 +LI+SP R+ Sbjct: 51 ALIISPTRE 59>XP_006721713 Length = 413 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SLIVSPRRK 9 +LI+SP R+ Sbjct: 51 ALIISPTRE 59>XP_005273505 Length = 997 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 SLI+ PR+ Sbjct: 361 SLIIHPRK 368>XP_005273504 Length = 1009 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLIVSPRR 8 SLI+ PR+ Sbjct: 361 SLIIHPRK 368>NP_001073937 Length = 134 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SLIVSPR 7 SL+V+PR Sbjct: 79 SLVVAPR 85Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.135 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 723,551 Number of extensions: 767 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |