Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005350 18 1482 NP_001008504 17 3301 NP_001008503 17 3301 NP_001272452 17 3301 NP_001138751 17 3301 NP_001138754 17 3301 NP_001272451 17 3301 NP_001138757 17 3301 NP_001138755 17 3301 NP_001008505 17 3301 NP_001272453 17 3301 NP_001138756 17 3301 NP_001138758 17 3301 NP_000905 17 3301 XP_006715560 17 3301 XP_006715559 17 3301 NP_835469 16 7355 XP_005262185 16 7355 NP_001005479 16 7355 NP_056288 15 9605 NP_075463 15 9605 NP_079002 15 9605 NP_001257514 15 9605 NP_001257513 15 9605 XP_006719812 15 9605>NP_005350 Length = 552 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SLITAITT 8 SLITAITT Sbjct: 56 SLITAITT 63>NP_001008504 Length = 392 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_001008503 Length = 418 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_001272452 Length = 414 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_001138751 Length = 493 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 159 SMITAITIM 167>NP_001138754 Length = 406 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_001272451 Length = 97 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_001138757 Length = 389 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_001138755 Length = 397 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_001008505 Length = 446 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_001272453 Length = 493 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 159 SMITAITIM 167>NP_001138756 Length = 403 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_001138758 Length = 420 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>NP_000905 Length = 400 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 66 SMITAITIM 74>XP_006715560 Length = 197 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 128 SMITAITIM 136>XP_006715559 Length = 493 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SLITAITTM 9 S+ITAIT M Sbjct: 159 SMITAITIM 167>NP_835469 Length = 220 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SLITAITT 8 SL+TA+T+ Sbjct: 16 SLVTAVTS 23>XP_005262185 Length = 243 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SLITAITT 8 SL+TA+T+ Sbjct: 39 SLVTAVTS 46>NP_001005479 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SLITAITT 8 SL+T +TT Sbjct: 119 SLVTTVTT 126>NP_056288 Length = 2046 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SLITAIT 7 SL+TAIT Sbjct: 1833 SLLTAIT 1839>NP_075463 Length = 3013 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LITAITTM 9 LIT ITT+ Sbjct: 430 LITIITTL 437>NP_079002 Length = 822 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ITAITTM 9 ITAIT+M Sbjct: 773 ITAITSM 779>NP_001257514 Length = 830 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ITAITTM 9 ITAIT+M Sbjct: 781 ITAITSM 787>NP_001257513 Length = 781 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ITAITTM 9 ITAIT+M Sbjct: 732 ITAITSM 738>XP_006719812 Length = 3019 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LITAITTM 9 LIT ITT+ Sbjct: 427 LITIITTL 434Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.123 0.282 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 265,284 Number of extensions: 433 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |