Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 665 NP_001075109 19 665 NP_001005210 18 1935 NP_808882 17 3301 NP_001137544 17 3301 XP_006720011 17 3301 XP_006720010 17 3301 NP_066270 15 9605 NP_001275915 15 9605 NP_001275914 15 9605 NP_009099 15 9605 NP_758519 15 9605 NP_000751 15 9605 NP_724781 15 9605 NP_001015001 15 9605 NP_940999 15 9605 XP_005256997 15 9605 XP_005256995 15 9605 XP_005270552 15 9605 XP_005270550 15 9605 XP_005270549 15 9605 NP_004913 15 9605>NP_008835 Length = 4128 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SLATNFLLK 9 SLATNFLL+ Sbjct: 2556 SLATNFLLE 2564>NP_001075109 Length = 4097 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SLATNFLLK 9 SLATNFLL+ Sbjct: 2556 SLATNFLLE 2564>NP_001005210 Length = 341 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 SLATNFLL 8 S+ATNFLL Sbjct: 315 SVATNFLL 322>NP_808882 Length = 309 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLATNFLLK 9 ++ATNFLL+ Sbjct: 300 NVATNFLLQ 308>NP_001137544 Length = 344 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLATNFLLK 9 ++ATNFLL+ Sbjct: 335 NVATNFLLQ 343>XP_006720011 Length = 231 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLATNFLLK 9 ++ATNFLL+ Sbjct: 222 NVATNFLLQ 230>XP_006720010 Length = 262 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SLATNFLLK 9 ++ATNFLL+ Sbjct: 253 NVATNFLLQ 261>NP_066270 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SLATNFLLK 9 SLA FLL+ Sbjct: 25 SLAAGFLLR 33>NP_001275915 Length = 1616 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LATNFLL 8 +ATNF+L Sbjct: 399 VATNFML 405>NP_001275914 Length = 1621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LATNFLL 8 +ATNF+L Sbjct: 399 VATNFML 405>NP_009099 Length = 1581 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LATNFLL 8 +ATNF+L Sbjct: 399 VATNFML 405>NP_758519 Length = 783 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ATNFLLK 9 AT FLLK Sbjct: 485 ATGFLLK 491>NP_000751 Length = 836 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ATNFLLK 9 AT FLLK Sbjct: 485 ATGFLLK 491>NP_724781 Length = 863 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ATNFLLK 9 AT FLLK Sbjct: 485 ATGFLLK 491>NP_001015001 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SLATNFLLK 9 SLA FLL+ Sbjct: 25 SLAAGFLLR 33>NP_940999 Length = 1094 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LATNFLLK 9 + TNFL+K Sbjct: 357 VTTNFLVK 364>XP_005256997 Length = 1560 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LATNFLL 8 +ATNF+L Sbjct: 338 VATNFML 344>XP_005256995 Length = 1621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LATNFLL 8 +ATNF+L Sbjct: 399 VATNFML 405>XP_005270552 Length = 731 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ATNFLLK 9 AT FLLK Sbjct: 353 ATGFLLK 359>XP_005270550 Length = 835 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ATNFLLK 9 AT FLLK Sbjct: 485 ATGFLLK 491>XP_005270549 Length = 841 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ATNFLLK 9 AT FLLK Sbjct: 463 ATGFLLK 469>NP_004913 Length = 1094 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LATNFLLK 9 + TNFL+K Sbjct: 357 VTTNFLVK 364Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.134 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 396,653 Number of extensions: 498 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |