Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 21 175 NP_001275962 17 4312 NP_001275961 17 4312 NP_006206 17 4312 NP_056142 16 5631 XP_006711311 16 5631 XP_005245106 16 5631 NP_112503 16 7355 NP_000094 16 7355 NP_000615 16 7355 NP_000809 16 7355 XP_006720469 16 7355 XP_005254249 16 7355 XP_005254248 16 7355 XP_005254247 16 7355 NP_001127838 16 7355 NP_001273886 15 9605 NP_149115 15 9605 NP_001207423 15 9605 NP_001207425 15 9605 NP_542392 15 9605 NP_003813 15 9605 NP_995582 15 9605 NP_001263393 15 9605 XP_006719734 15 9605 XP_005245119 15 9605 XP_005245118 15 9605>NP_115803 Length = 1156 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKVMVNYMY 9 SKVM NYMY Sbjct: 507 SKVMANYMY 515>NP_001275962 Length = 427 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VMVNYMY 9 V+VNY+Y Sbjct: 208 VLVNYIY 214>NP_001275961 Length = 464 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VMVNYMY 9 V+VNY+Y Sbjct: 245 VLVNYIY 251>NP_006206 Length = 427 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VMVNYMY 9 V+VNY+Y Sbjct: 208 VLVNYIY 214>NP_056142 Length = 1016 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 KVMVNYMY 9 +++VN+MY Sbjct: 286 RLLVNFMY 293>XP_006711311 Length = 950 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 KVMVNYMY 9 +++VN+MY Sbjct: 220 RLLVNFMY 227>XP_005245106 Length = 970 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 KVMVNYMY 9 +++VN+MY Sbjct: 286 RLLVNFMY 293>NP_112503 Length = 503 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KVMVNYMY 9 KVM N++Y Sbjct: 354 KVMENFIY 361>NP_000094 Length = 503 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KVMVNYMY 9 KVM N++Y Sbjct: 354 KVMENFIY 361>NP_000615 Length = 406 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VMVNYMY 9 +MVNY++ Sbjct: 198 IMVNYIF 204>NP_000809 Length = 585 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKVMVNYMY 9 SKV VNY + Sbjct: 83 SKVDVNYAF 91>XP_006720469 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KVMVNYMY 9 KVM N++Y Sbjct: 252 KVMENFIY 259>XP_005254249 Length = 444 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KVMVNYMY 9 KVM N++Y Sbjct: 295 KVMENFIY 302>XP_005254248 Length = 503 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KVMVNYMY 9 KVM N++Y Sbjct: 354 KVMENFIY 361>XP_005254247 Length = 503 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KVMVNYMY 9 KVM N++Y Sbjct: 354 KVMENFIY 361>NP_001127838 Length = 585 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKVMVNYMY 9 SKV VNY + Sbjct: 83 SKVDVNYAF 91>NP_001273886 Length = 341 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SKVMVNYM 8 +KVMV+Y+ Sbjct: 249 TKVMVDYI 256>NP_149115 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SKVMVNYM 8 +KVMV+Y+ Sbjct: 392 TKVMVDYI 399>NP_001207423 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SKVMVNYM 8 ++VMV YM Sbjct: 245 ARVMVRYM 252>NP_001207425 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SKVMVNYM 8 ++VMV YM Sbjct: 245 ARVMVRYM 252>NP_542392 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SKVMVNYM 8 ++VMV YM Sbjct: 276 ARVMVRYM 283>NP_003813 Length = 495 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 MVNYMY 9 MVNY Y Sbjct: 27 MVNYSY 32>NP_995582 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 MVNYMY 9 MVNY Y Sbjct: 73 MVNYSY 78>NP_001263393 Length = 469 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 MVNYMY 9 MVNY Y Sbjct: 1 MVNYSY 6>XP_006719734 Length = 411 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SKVMVNYM 8 +KVMV+Y+ Sbjct: 319 TKVMVDYI 326>XP_005245119 Length = 469 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 MVNYMY 9 MVNY Y Sbjct: 1 MVNYSY 6>XP_005245118 Length = 565 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 MVNYMY 9 MVNY Y Sbjct: 97 MVNYSY 102Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.129 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 343,455 Number of extensions: 384 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |