Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001243398 18 1135 NP_036462 18 1135 NP_001243397 18 1135 XP_005269721 18 1135 NP_001094891 16 5631 NP_620636 16 7355 NP_001607 16 7355 NP_003062 16 7355 NP_060275 16 7355 NP_001265509 16 7355 NP_001265508 16 7355 NP_006276 16 7355 XP_005259081 16 7355 XP_006723314 16 7355 XP_005259080 16 7355 XP_006723313 16 7355 XP_005247781 16 7355 XP_005263900 16 7355 NP_112224 15 9605 NP_001157755 15 9605 NP_006763 15 9605 NP_679211 15 9605 NP_001157753 15 9605 NP_659469 15 9605 NP_001104508 15 9605 NP_001274079 15 9605 NP_001097 15 9605 XP_005253212 15 9605 XP_005253211 15 9605 XP_005250270 15 9605 XP_005250269 15 9605 XP_005250266 15 9605 XP_006715960 15 9605 XP_005250265 15 9605 XP_005250264 15 9605 XP_005250262 15 9605 XP_006715382 15 9605 XP_005265640 15 9605>NP_001243398 Length = 1781 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 SKNILLR S Sbjct: 468 SKNILLRHS 476>NP_036462 Length = 2073 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 SKNILLR S Sbjct: 760 SKNILLRHS 768>NP_001243397 Length = 1890 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 SKNILLR S Sbjct: 577 SKNILLRHS 585>XP_005269721 Length = 2073 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 SKNILLR S Sbjct: 760 SKNILLRHS 768>NP_001094891 Length = 1022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SKNILLR 7 SKNI+LR Sbjct: 537 SKNIILR 543>NP_620636 Length = 1009 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNILLRRS 9 KNI LRR+ Sbjct: 638 KNITLRRT 645>NP_001607 Length = 513 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 SKN+LL+ + Sbjct: 325 SKNVLLKNN 333>NP_003062 Length = 1009 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNILLRRS 9 KNI LRR+ Sbjct: 638 KNITLRRT 645>NP_060275 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 S+N+ LRRS Sbjct: 318 SENLSLRRS 326>NP_001265509 Length = 405 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 SKN+LL+ + Sbjct: 217 SKNVLLKNN 225>NP_001265508 Length = 513 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 SKN+LL+ + Sbjct: 325 SKNVLLKNN 333>NP_006276 Length = 626 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SKNILLRR 8 SKN L+RR Sbjct: 178 SKNCLVRR 185>XP_005259081 Length = 966 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 S+N+ LRRS Sbjct: 419 SENLSLRRS 427>XP_006723314 Length = 968 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 S+N+ LRRS Sbjct: 419 SENLSLRRS 427>XP_005259080 Length = 1064 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 S+N+ LRRS Sbjct: 419 SENLSLRRS 427>XP_006723313 Length = 1066 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 S+N+ LRRS Sbjct: 419 SENLSLRRS 427>XP_005247781 Length = 1008 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KNILLRRS 9 KNI LRR+ Sbjct: 637 KNITLRRT 644>XP_005263900 Length = 361 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 SKN+LL+ + Sbjct: 325 SKNVLLKNN 333>NP_112224 Length = 1849 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SKNILLRRS 9 SKN LLR S Sbjct: 764 SKNKLLRTS 772>NP_001157755 Length = 109 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 81 KNILLR 86>NP_006763 Length = 1343 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKNILLRRS 9 S+N LLRR+ Sbjct: 77 SRNKLLRRT 85>NP_679211 Length = 565 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 537 KNILLR 542>NP_001157753 Length = 564 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 536 KNILLR 541>NP_659469 Length = 735 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 72 KNILLR 77>NP_001104508 Length = 690 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 72 KNILLR 77>NP_001274079 Length = 707 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 72 KNILLR 77>NP_001097 Length = 512 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SKNILLR 7 SKN+LL+ Sbjct: 324 SKNVLLK 330>XP_005253212 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SKNILLRRS 9 SKN LLR S Sbjct: 721 SKNKLLRTS 729>XP_005253211 Length = 1881 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SKNILLRRS 9 SKN LLR S Sbjct: 764 SKNKLLRTS 772>XP_005250270 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 72 KNILLR 77>XP_005250269 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 162 KNILLR 167>XP_005250266 Length = 735 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 72 KNILLR 77>XP_006715960 Length = 737 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 74 KNILLR 79>XP_005250265 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 162 KNILLR 167>XP_005250264 Length = 792 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 162 KNILLR 167>XP_005250262 Length = 825 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 162 KNILLR 167>XP_006715382 Length = 109 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KNILLR 7 KNILLR Sbjct: 81 KNILLR 86>XP_005265640 Length = 533 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SKNILLR 7 SKN+LL+ Sbjct: 345 SKNVLLK 351Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.133 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 448,569 Number of extensions: 721 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |