Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 18 1935 XP_006716142 18 1935 XP_005250088 18 1935 XP_006716141 18 1935 XP_005250085 18 1935 XP_006716140 18 1935 XP_005250084 18 1935 XP_005250083 18 1935 XP_005250082 18 1935 NP_001001662 17 4312 XP_006726491 17 4312 XP_005251799 17 4312 XP_005251801 17 4312 XP_006717044 17 4312 XP_006717043 17 4312 XP_006715877 17 4312 XP_006710244 17 4312 NP_001164218 16 5631 NP_006214 16 5631 NP_060228 16 5631 NP_003449 16 7355 XP_006713443 16 7355 NP_079133 15 9605 NP_001334 15 9605 NP_001231892 15 9605 NP_054777 15 9605 NP_660093 15 9605 NP_004843 15 9605 NP_071903 15 9605 NP_060480 15 9605 NP_892009 15 9605 NP_004489 15 9605 XP_006718428 15 9605 XP_006718427 15 9605 XP_005249615 15 9605 XP_005249612 15 9605 NP_001073957 15 9605>NP_733751 Length = 4911 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKLKSGIRA 9 SKLKSGI A Sbjct: 910 SKLKSGIGA 918>XP_006716142 Length = 4927 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKLKSGIRA 9 SKLKSGI A Sbjct: 911 SKLKSGIGA 919>XP_005250088 Length = 4928 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKLKSGIRA 9 SKLKSGI A Sbjct: 911 SKLKSGIGA 919>XP_006716141 Length = 4959 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKLKSGIRA 9 SKLKSGI A Sbjct: 911 SKLKSGIGA 919>XP_005250085 Length = 4979 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKLKSGIRA 9 SKLKSGI A Sbjct: 911 SKLKSGIGA 919>XP_006716140 Length = 4982 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKLKSGIRA 9 SKLKSGI A Sbjct: 911 SKLKSGIGA 919>XP_005250084 Length = 4982 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKLKSGIRA 9 SKLKSGI A Sbjct: 911 SKLKSGIGA 919>XP_005250083 Length = 4982 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKLKSGIRA 9 SKLKSGI A Sbjct: 910 SKLKSGIGA 918>XP_005250082 Length = 4983 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKLKSGIRA 9 SKLKSGI A Sbjct: 911 SKLKSGIGA 919>NP_001001662 Length = 699 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 KLKSG+R Sbjct: 516 KLKSGLR 522>XP_006726491 Length = 230 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SKLKSGI 7 SKLKSG+ Sbjct: 168 SKLKSGV 174>XP_005251799 Length = 699 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 KLKSG+R Sbjct: 516 KLKSGLR 522>XP_005251801 Length = 675 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 KLKSG+R Sbjct: 492 KLKSGLR 498>XP_006717044 Length = 699 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 KLKSG+R Sbjct: 516 KLKSGLR 522>XP_006717043 Length = 711 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 KLKSG+R Sbjct: 528 KLKSGLR 534>XP_006715877 Length = 230 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SKLKSGI 7 SKLKSG+ Sbjct: 168 SKLKSGV 174>XP_006710244 Length = 230 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SKLKSGI 7 SKLKSG+ Sbjct: 168 SKLKSGV 174>NP_001164218 Length = 133 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 KLKSG+R Sbjct: 82 KLKSGMR 88>NP_006214 Length = 156 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 KLKSG+R Sbjct: 82 KLKSGMR 88>NP_060228 Length = 394 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 K+KSGIR Sbjct: 84 KVKSGIR 90>NP_003449 Length = 3926 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 K+KSG+R Sbjct: 634 KVKSGVR 640>XP_006713443 Length = 3970 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KLKSGIR 8 K+KSG+R Sbjct: 678 KVKSGVR 684>NP_079133 Length = 1844 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SKLKSG 6 SKLKSG Sbjct: 921 SKLKSG 926>NP_001334 Length = 770 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SKLKSGI 7 +KLKSG+ Sbjct: 204 NKLKSGV 210>NP_001231892 Length = 2488 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SKLKSGI 7 SK+KSG+ Sbjct: 8 SKMKSGL 14>NP_054777 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SKLKSGIR 8 SK+K G+R Sbjct: 254 SKMKRGLR 261>NP_660093 Length = 2429 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SKLKSGI 7 SK+KSG+ Sbjct: 8 SKMKSGL 14>NP_004843 Length = 504 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SKLKSG 6 SKLKSG Sbjct: 379 SKLKSG 384>NP_071903 Length = 490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LKSGIRA 9 LK GIRA Sbjct: 139 LKKGIRA 145>NP_060480 Length = 429 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SKLKSG 6 SKLKSG Sbjct: 134 SKLKSG 139>NP_892009 Length = 2432 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SKLKSGI 7 SK+KSG+ Sbjct: 8 SKMKSGL 14>NP_004489 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SKLKSG 6 SKLKSG Sbjct: 338 SKLKSG 343>XP_006718428 Length = 2455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SKLKSGI 7 SK+KSG+ Sbjct: 8 SKMKSGL 14>XP_006718427 Length = 2465 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SKLKSGI 7 SK+KSG+ Sbjct: 8 SKMKSGL 14>XP_005249615 Length = 304 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LKSGIRA 9 LK GIRA Sbjct: 139 LKKGIRA 145>XP_005249612 Length = 436 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LKSGIRA 9 LK GIRA Sbjct: 139 LKKGIRA 145>NP_001073957 Length = 494 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SKLKSG 6 SKLKSG Sbjct: 367 SKLKSG 372Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.124 0.298 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 417,597 Number of extensions: 395 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |