Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 18 1135 NP_653080 18 1135 XP_005267292 18 1135 XP_005267291 18 1135 XP_005267290 18 1135 NP_001273359 17 4312 NP_620147 17 4312 NP_055756 16 7355 NP_203748 16 7355 XP_005261449 16 7355 XP_005261448 16 7355 XP_005268396 16 7355 XP_005268394 16 7355 XP_005268395 16 7355 XP_005271774 16 7355 XP_005271772 16 7355 XP_005275799 16 7355 XP_005275797 16 7355 XP_005275798 16 7355 XP_006710032 16 7355 XP_005275796 16 7355 NP_149115 15 9605 NP_001139019 15 9605 NP_116294 15 9605 NP_001277251 15 9605 NP_005500 15 9605 NP_001277250 15 9605 XP_006719734 15 9605 XP_006714623 15 9605 XP_005271970 15 9605 XP_005271969 15 9605 XP_005271967 15 9605 XP_005271966 15 9605>NP_005091 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKDRSEASE 9 SKD SEASE Sbjct: 1631 SKDMSEASE 1639>NP_653080 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKDRSEASE 9 SKD SEASE Sbjct: 1533 SKDMSEASE 1541>XP_005267292 Length = 1677 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKDRSEASE 9 SKD SEASE Sbjct: 1526 SKDMSEASE 1534>XP_005267291 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKDRSEASE 9 SKD SEASE Sbjct: 1533 SKDMSEASE 1541>XP_005267290 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKDRSEASE 9 SKD SEASE Sbjct: 1631 SKDMSEASE 1639>NP_001273359 Length = 606 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SKDRSEASE 9 S +RSEASE Sbjct: 84 SDNRSEASE 92>NP_620147 Length = 666 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SKDRSEASE 9 S +RSEASE Sbjct: 84 SDNRSEASE 92>NP_055756 Length = 970 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 471 QDRCEASE 478>NP_203748 Length = 883 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KDRSEASE 9 KD EASE Sbjct: 75 KDEKEASE 82>XP_005261449 Length = 1029 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 533 QDRCEASE 540>XP_005261448 Length = 1032 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 533 QDRCEASE 540>XP_005268396 Length = 1603 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 1553 QDRMEASE 1560>XP_005268394 Length = 1603 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 1553 QDRMEASE 1560>XP_005268395 Length = 1603 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 1553 QDRMEASE 1560>XP_005271774 Length = 443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KDRSEASE 9 KD EASE Sbjct: 76 KDEKEASE 83>XP_005271772 Length = 884 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KDRSEASE 9 KD EASE Sbjct: 76 KDEKEASE 83>XP_005275799 Length = 1680 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 1630 QDRMEASE 1637>XP_005275797 Length = 1680 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 1630 QDRMEASE 1637>XP_005275798 Length = 1680 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 1630 QDRMEASE 1637>XP_006710032 Length = 1694 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 1644 QDRMEASE 1651>XP_005275796 Length = 1733 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KDRSEASE 9 +DR EASE Sbjct: 1683 QDRMEASE 1690>NP_149115 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 +KD SEA E Sbjct: 103 AKDLSEAEE 111>NP_001139019 Length = 401 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 KDRSEAS 8 KDR EAS Sbjct: 139 KDRHEAS 145>NP_116294 Length = 401 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 KDRSEAS 8 KDR EAS Sbjct: 139 KDRHEAS 145>NP_001277251 Length = 2854 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 S+DRS+ E Sbjct: 1353 SRDRSQGGE 1361>NP_005500 Length = 3027 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 S+DRS+ E Sbjct: 1526 SRDRSQGGE 1534>NP_001277250 Length = 3048 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 S+DRS+ E Sbjct: 1526 SRDRSQGGE 1534>XP_006719734 Length = 411 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 +KD SEA E Sbjct: 103 AKDLSEAEE 111>XP_006714623 Length = 1625 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 S+DRS+ E Sbjct: 1526 SRDRSQGGE 1534>XP_005271970 Length = 2931 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 S+DRS+ E Sbjct: 1526 SRDRSQGGE 1534>XP_005271969 Length = 3020 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 S+DRS+ E Sbjct: 1460 SRDRSQGGE 1468>XP_005271967 Length = 3065 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 S+DRS+ E Sbjct: 1526 SRDRSQGGE 1534>XP_005271966 Length = 3086 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SKDRSEASE 9 S+DRS+ E Sbjct: 1526 SRDRSQGGE 1534Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.271 0.0924 0.197 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 427,940 Number of extensions: 482 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |