Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005179 18 1135 NP_001269435 17 4312 NP_001229854 16 7355 NP_055673 16 7355 NP_059113 16 7355 XP_005245747 16 7355 XP_005245746 16 7355 XP_005245743 16 7355 XP_005245742 16 7355 XP_006711757 16 7355 XP_005245741 16 7355 NP_057653 15 9605 NP_005987 15 9605 NP_036423 15 9605 NP_699201 15 9605 NP_056002 15 9605 NP_001186088 15 9605 NP_060733 15 9605 NP_835260 15 9605 XP_006719768 15 9605 XP_005248974 15 9605 XP_005248972 15 9605 XP_006714523 15 9605 XP_005248329 15 9605 XP_005248328 15 9605 XP_006714522 15 9605 XP_006714521 15 9605 XP_006714520 15 9605 XP_005248327 15 9605 XP_005248326 15 9605 XP_006714519 15 9605 XP_006714020 15 9605 XP_005248200 15 9605 XP_006714019 15 9605 XP_006712102 15 9605 XP_005263508 15 9605 XP_005263506 15 9605 XP_006710634 15 9605 XP_005263505 15 9605 NP_060908 15 9605>NP_005179 Length = 906 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SKAASDSLH 9 SKAAS SLH Sbjct: 520 SKAASGSLH 528>NP_001269435 Length = 709 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 S A+SD LH Sbjct: 347 SSASSDGLH 355>NP_001229854 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 +KAA D LH Sbjct: 207 TKAAIDHLH 215>NP_055673 Length = 709 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 +KAA D LH Sbjct: 285 TKAAIDHLH 293>NP_059113 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 SKAA + LH Sbjct: 572 SKAAKNRLH 580>XP_005245747 Length = 469 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 +KAA D LH Sbjct: 45 TKAAIDHLH 53>XP_005245746 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 +KAA D LH Sbjct: 50 TKAAIDHLH 58>XP_005245743 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 +KAA D LH Sbjct: 285 TKAAIDHLH 293>XP_005245742 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 +KAA D LH Sbjct: 207 TKAAIDHLH 215>XP_006711757 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 +KAA D LH Sbjct: 207 TKAAIDHLH 215>XP_005245741 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 +KAA D LH Sbjct: 207 TKAAIDHLH 215>NP_057653 Length = 743 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 S AAS S+H Sbjct: 616 SAAASSSVH 624>NP_005987 Length = 723 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SKAASDSLH 9 S AAS S+H Sbjct: 596 SAAASSSVH 604>NP_036423 Length = 2120 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKAA S H Sbjct: 810 SKAAGSSCH 818>NP_699201 Length = 463 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 S ASD LH Sbjct: 48 SPTASDMLH 56>NP_056002 Length = 1132 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KAASDSLH 9 KAAS LH Sbjct: 756 KAASKGLH 763>NP_001186088 Length = 463 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 S ASD LH Sbjct: 48 SPTASDMLH 56>NP_060733 Length = 1435 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KAASDSL 8 KAASDS+ Sbjct: 200 KAASDSV 206>NP_835260 Length = 2839 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1928 SKAVSQRLH 1936>XP_006719768 Length = 2120 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKAA S H Sbjct: 810 SKAAGSSCH 818>XP_005248974 Length = 270 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 S ASD LH Sbjct: 48 SPTASDMLH 56>XP_005248972 Length = 463 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 S ASD LH Sbjct: 48 SPTASDMLH 56>XP_006714523 Length = 2542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1597 SKAVSQRLH 1605>XP_005248329 Length = 2699 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1754 SKAVSQRLH 1762>XP_005248328 Length = 2699 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1754 SKAVSQRLH 1762>XP_006714522 Length = 2719 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1774 SKAVSQRLH 1782>XP_006714521 Length = 2781 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1836 SKAVSQRLH 1844>XP_006714520 Length = 2802 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1857 SKAVSQRLH 1865>XP_005248327 Length = 2839 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1928 SKAVSQRLH 1936>XP_005248326 Length = 2873 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1928 SKAVSQRLH 1936>XP_006714519 Length = 2873 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 SKAASDSLH 9 SKA S LH Sbjct: 1928 SKAVSQRLH 1936>XP_006714020 Length = 1097 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KAASDSLH 9 KAAS LH Sbjct: 721 KAASKGLH 728>XP_005248200 Length = 1103 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KAASDSLH 9 KAAS LH Sbjct: 756 KAASKGLH 763>XP_006714019 Length = 1104 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KAASDSLH 9 KAAS LH Sbjct: 756 KAASKGLH 763>XP_006712102 Length = 1313 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KAASDSL 8 KAASDS+ Sbjct: 78 KAASDSV 84>XP_005263508 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKAASDSLH 9 SKAA DS++ Sbjct: 6 SKAALDSIN 14>XP_005263506 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKAASDSLH 9 SKAA DS++ Sbjct: 6 SKAALDSIN 14>XP_006710634 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKAASDSLH 9 SKAA DS++ Sbjct: 6 SKAALDSIN 14>XP_005263505 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKAASDSLH 9 SKAA DS++ Sbjct: 6 SKAALDSIN 14>NP_060908 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SKAASDSLH 9 SKAA DS++ Sbjct: 6 SKAALDSIN 14Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.293 0.101 0.245 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 396,245 Number of extensions: 348 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |