Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005912 19 665 XP_005248577 19 665 XP_005248576 19 665 NP_001006620 17 3301 NP_001077058 16 5631 NP_001942 16 5631 NP_001077057 16 5631 XP_006716497 16 5631 NP_001164604 16 7355 NP_068578 16 7355 NP_001269240 16 7355 NP_001164603 16 7355 NP_001269241 16 7355 NP_974197 16 7355 NP_974198 16 7355 NP_005707 16 7355 NP_974199 16 7355 NP_974223 16 7355 XP_006724897 16 7355 XP_006724895 16 7355 XP_005274773 16 7355 XP_005274771 16 7355 XP_006724894 16 7355 XP_006716762 16 7355 XP_006716761 16 7355 XP_006716760 16 7355 XP_006716759 16 7355 XP_006716757 16 7355 XP_005251165 16 7355 XP_005251164 16 7355 XP_005251163 16 7355 XP_006716755 16 7355 XP_006716754 16 7355 XP_006716753 16 7355 NP_663306 15 9605 NP_003179 15 9605 NP_663304 15 9605 NP_663305 15 9605 NP_006558 15 9605 XP_005248868 15 9605 XP_005248869 15 9605>NP_005912 Length = 1512 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SISGDMVEA 9 SISGD+VEA Sbjct: 626 SISGDVVEA 634>XP_005248577 Length = 1349 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SISGDMVEA 9 SISGD+VEA Sbjct: 463 SISGDVVEA 471>XP_005248576 Length = 1375 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SISGDMVEA 9 SISGD+VEA Sbjct: 489 SISGDVVEA 497>NP_001006620 Length = 475 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SISGDMVE 8 SISGD VE Sbjct: 356 SISGDKVE 363>NP_001077058 Length = 185 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SISGDMVE 8 SISGD+++ Sbjct: 136 SISGDIID 143>NP_001942 Length = 346 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SISGDMVE 8 SISGD+++ Sbjct: 297 SISGDIID 304>NP_001077057 Length = 345 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SISGDMVE 8 SISGD+++ Sbjct: 296 SISGDIID 303>XP_006716497 Length = 185 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SISGDMVE 8 SISGD+++ Sbjct: 136 SISGDIID 143>NP_001164604 Length = 192 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 75 VSGELIEA 82>NP_068578 Length = 230 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 113 VSGELIEA 120>NP_001269240 Length = 244 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 127 VSGELIEA 134>NP_001164603 Length = 230 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 113 VSGELIEA 120>NP_001269241 Length = 230 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 113 VSGELIEA 120>NP_974197 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 GDMVEA 9 GDM+EA Sbjct: 175 GDMIEA 180>NP_974198 Length = 236 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 GDMVEA 9 GDM+EA Sbjct: 78 GDMIEA 83>NP_005707 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 GDMVEA 9 GDM+EA Sbjct: 175 GDMIEA 180>NP_974199 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 GDMVEA 9 GDM+EA Sbjct: 175 GDMIEA 180>NP_974223 Length = 236 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 GDMVEA 9 GDM+EA Sbjct: 78 GDMIEA 83>XP_006724897 Length = 197 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 80 VSGELIEA 87>XP_006724895 Length = 238 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 121 VSGELIEA 128>XP_005274773 Length = 244 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 127 VSGELIEA 134>XP_005274771 Length = 251 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 134 VSGELIEA 141>XP_006724894 Length = 252 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISGDMVEA 9 +SG+++EA Sbjct: 135 VSGELIEA 142>XP_006716762 Length = 1571 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 1276 SISGDM 1281>XP_006716761 Length = 313 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 18 SISGDM 23>XP_006716760 Length = 428 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 133 SISGDM 138>XP_006716759 Length = 444 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 149 SISGDM 154>XP_006716757 Length = 1356 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 1061 SISGDM 1066>XP_005251165 Length = 1532 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 1237 SISGDM 1242>XP_005251164 Length = 1552 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 1257 SISGDM 1262>XP_005251163 Length = 1574 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 1279 SISGDM 1284>XP_006716755 Length = 1634 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 1339 SISGDM 1344>XP_006716754 Length = 1655 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 1360 SISGDM 1365>XP_006716753 Length = 1656 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 SISGDM 6 SISGDM Sbjct: 1361 SISGDM 1366>NP_663306 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SISGDMVEA 9 S +G+M+EA Sbjct: 13 SSAGEMIEA 21>NP_003179 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SISGDMVEA 9 S +G+M+EA Sbjct: 13 SSAGEMIEA 21>NP_663304 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SISGDMVEA 9 S +G+M+EA Sbjct: 13 SSAGEMIEA 21>NP_663305 Length = 518 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SISGDMVEA 9 S +G+M+EA Sbjct: 13 SSAGEMIEA 21>NP_006558 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SISGDMVE 8 +I GD+VE Sbjct: 387 TIGGDLVE 394>XP_005248868 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SISGDMVE 8 +I GD+VE Sbjct: 387 TIGGDLVE 394>XP_005248869 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SISGDMVE 8 +I GD+VE Sbjct: 387 TIGGDLVE 394Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.120 0.291 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 483,074 Number of extensions: 573 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |