Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001184037 18 1935 NP_001184043 18 1935 NP_001184042 18 1935 NP_001184038 18 1935 NP_001184036 18 1935 NP_055390 18 1935 NP_001073286 17 4312 NP_000201 17 4312 XP_006712574 17 4312 XP_006712573 17 4312 XP_005269218 16 5631 NP_056290 16 7355 XP_006726461 16 7355 NP_002372 15 9605>NP_001184037 Length = 255 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SIRQKTAIG 9 SIRQK A+G Sbjct: 29 SIRQKLALG 37>NP_001184043 Length = 536 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SIRQKTAIG 9 SIRQK A+G Sbjct: 310 SIRQKLALG 318>NP_001184042 Length = 563 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SIRQKTAIG 9 SIRQK A+G Sbjct: 337 SIRQKLALG 345>NP_001184038 Length = 244 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SIRQKTAIG 9 SIRQK A+G Sbjct: 18 SIRQKLALG 26>NP_001184036 Length = 474 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SIRQKTAIG 9 SIRQK A+G Sbjct: 248 SIRQKLALG 256>NP_055390 Length = 487 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SIRQKTAIG 9 SIRQK A+G Sbjct: 261 SIRQKLALG 269>NP_001073286 Length = 1091 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 IRQKTAIG 9 +RQKTA G Sbjct: 483 LRQKTACG 490>NP_000201 Length = 1073 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 IRQKTAIG 9 +RQKTA G Sbjct: 483 LRQKTACG 490>XP_006712574 Length = 1058 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 IRQKTAIG 9 +RQKTA G Sbjct: 483 LRQKTACG 490>XP_006712573 Length = 1076 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 IRQKTAIG 9 +RQKTA G Sbjct: 483 LRQKTACG 490>XP_005269218 Length = 2009 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SIRQKTAI 8 S+RQK+AI Sbjct: 5 SLRQKSAI 12>NP_056290 Length = 518 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SIRQKTA 7 SIR+KTA Sbjct: 285 SIREKTA 291>XP_006726461 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SIRQKTAIG 9 ++RQKTA G Sbjct: 274 TLRQKTAGG 282>NP_002372 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SIRQKTAIG 9 S+R K A+G Sbjct: 389 SVRDKCALG 397Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.128 0.317 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 369,028 Number of extensions: 310 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |