Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1135 NP_671714 18 1135 XP_006715890 18 1135 XP_005250160 18 1135 XP_005250159 18 1135 NP_065988 16 5631 XP_005267986 16 5631 NP_006690 16 7355 NP_008971 16 7355 NP_653333 16 7355 XP_005258523 16 7355 XP_005258522 16 7355 XP_005258520 16 7355 XP_005258521 16 7355 XP_005258519 16 7355 XP_005258518 16 7355 XP_005258516 16 7355 XP_006710365 16 7355 NP_001185498 16 7355 NP_001685 16 7355 NP_001166126 15 9605 NP_060730 15 9605 NP_699197 15 9605 NP_001004301 15 9605 NP_114102 15 9605 NP_002263 15 9605 NP_065856 15 9605 XP_005259182 15 9605 XP_006723069 15 9605 XP_006722575 15 9605>NP_005742 Length = 3907 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SINDEISVS 9 SI+DEISVS Sbjct: 1564 SIHDEISVS 1572>NP_671714 Length = 3899 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SINDEISVS 9 SI+DEISVS Sbjct: 1564 SIHDEISVS 1572>XP_006715890 Length = 3860 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SINDEISVS 9 SI+DEISVS Sbjct: 1564 SIHDEISVS 1572>XP_005250160 Length = 3939 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SINDEISVS 9 SI+DEISVS Sbjct: 1564 SIHDEISVS 1572>XP_005250159 Length = 3952 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SINDEISVS 9 SI+DEISVS Sbjct: 1564 SIHDEISVS 1572>NP_065988 Length = 2048 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SINDEISVS 9 S NDE SVS Sbjct: 948 SFNDEKSVS 956>XP_005267986 Length = 2022 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SINDEISVS 9 S NDE SVS Sbjct: 922 SFNDEKSVS 930>NP_006690 Length = 641 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SINDEISV 8 S+N E+SV Sbjct: 257 SVNSEVSV 264>NP_008971 Length = 856 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 INDEISV 8 IN+EISV Sbjct: 263 INEEISV 269>NP_653333 Length = 756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 INDEISV 8 IN+EISV Sbjct: 163 INEEISV 169>XP_005258523 Length = 756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 INDEISV 8 IN+EISV Sbjct: 163 INEEISV 169>XP_005258522 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 INDEISV 8 IN+EISV Sbjct: 163 INEEISV 169>XP_005258520 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 INDEISV 8 IN+EISV Sbjct: 163 INEEISV 169>XP_005258521 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 INDEISV 8 IN+EISV Sbjct: 163 INEEISV 169>XP_005258519 Length = 767 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 INDEISV 8 IN+EISV Sbjct: 174 INEEISV 180>XP_005258518 Length = 777 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 INDEISV 8 IN+EISV Sbjct: 174 INEEISV 180>XP_005258516 Length = 866 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 INDEISV 8 IN+EISV Sbjct: 263 INEEISV 269>XP_006710365 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SINDEISV 8 S+N E+SV Sbjct: 257 SVNSEVSV 264>NP_001185498 Length = 155 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SINDEISV 8 S+ND+IS+ Sbjct: 79 SLNDDISL 86>NP_001685 Length = 155 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SINDEISV 8 S+ND+IS+ Sbjct: 79 SLNDDISL 86>NP_001166126 Length = 531 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SINDEISVS 9 +IND SVS Sbjct: 233 AINDAFSVS 241>NP_060730 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SINDEISVS 9 +IND SVS Sbjct: 167 AINDAFSVS 175>NP_699197 Length = 3571 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SINDEISVS 9 S+N ++SVS Sbjct: 3198 SVNRQVSVS 3206>NP_001004301 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SINDEISVS 9 SIND S+S Sbjct: 167 SINDASSIS 175>NP_114102 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SINDEI 6 SINDE+ Sbjct: 155 SINDEV 160>NP_002263 Length = 520 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SINDEIS 7 S+NDEI+ Sbjct: 264 SLNDEIN 270>NP_065856 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 INDEISV 8 +ND+ISV Sbjct: 177 LNDQISV 183>XP_005259182 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SINDEI 6 SINDE+ Sbjct: 155 SINDEV 160>XP_006723069 Length = 533 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SINDEISVS 9 SIND S+S Sbjct: 167 SINDASSIS 175>XP_006722575 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 INDEISV 8 +ND+ISV Sbjct: 221 LNDQISV 227Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.293 0.116 0.259 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 461,698 Number of extensions: 549 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |