Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1135 XP_006718908 18 1135 XP_005271621 18 1135 XP_006718907 18 1135 XP_006718906 18 1135 XP_005271619 18 1135 XP_005271618 18 1135 NP_000405 16 7355 NP_001186221 16 7355 NP_001186220 16 7355 NP_644671 15 9605 NP_009330 15 9605 NP_001254514 15 9605 NP_001254515 15 9605 NP_699197 15 9605 NP_006730 15 9605 XP_006725233 15 9605 XP_006725232 15 9605 XP_006725231 15 9605 XP_006724305 15 9605 XP_006721485 15 9605 XP_006721484 15 9605 XP_006721483 15 9605 XP_006720285 15 9605 XP_005267988 15 9605 XP_005267987 15 9605 XP_006712781 15 9605 NP_478144 15 9605>NP_000042 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SILEIISKS 9 SILEI+SKS Sbjct: 1403 SILEILSKS 1411>XP_006718908 Length = 1708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SILEIISKS 9 SILEI+SKS Sbjct: 55 SILEILSKS 63>XP_005271621 Length = 2708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SILEIISKS 9 SILEI+SKS Sbjct: 1055 SILEILSKS 1063>XP_006718907 Length = 3050 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SILEIISKS 9 SILEI+SKS Sbjct: 1397 SILEILSKS 1405>XP_006718906 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SILEIISKS 9 SILEI+SKS Sbjct: 1403 SILEILSKS 1411>XP_005271619 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SILEIISKS 9 SILEI+SKS Sbjct: 1403 SILEILSKS 1411>XP_005271618 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SILEIISKS 9 SILEI+SKS Sbjct: 1403 SILEILSKS 1411>NP_000405 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SILEIISK 8 SI+E++SK Sbjct: 294 SIIEVLSK 301>NP_001186221 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SILEIISK 8 SI+E++SK Sbjct: 276 SIIEVLSK 283>NP_001186220 Length = 761 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SILEIISK 8 SI+E++SK Sbjct: 319 SIIEVLSK 326>NP_644671 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SILEIISK 8 SILE+I K Sbjct: 560 SILELIKK 567>NP_009330 Length = 750 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SILEIISK 8 SILE+I K Sbjct: 560 SILELIKK 567>NP_001254514 Length = 1052 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SILEIISK 8 S++EI+SK Sbjct: 711 SLMEILSK 718>NP_001254515 Length = 999 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SILEIISK 8 S++EI+SK Sbjct: 658 SLMEILSK 665>NP_699197 Length = 3571 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SILEIISKS 9 SILE +SK+ Sbjct: 2092 SILESVSKA 2100>NP_006730 Length = 734 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SILEIISKS 9 ++ E+ISKS Sbjct: 330 NVYEVISKS 338>XP_006725233 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ILEIISKS 9 I+EI SKS Sbjct: 486 IIEIFSKS 493>XP_006725232 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ILEIISKS 9 I+EI SKS Sbjct: 486 IIEIFSKS 493>XP_006725231 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ILEIISKS 9 I+EI SKS Sbjct: 486 IIEIFSKS 493>XP_006724305 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SILEIISKS 9 ++ E+ISKS Sbjct: 330 NVYEVISKS 338>XP_006721485 Length = 805 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SILEIISK 8 S++EI+SK Sbjct: 711 SLMEILSK 718>XP_006721484 Length = 997 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SILEIISK 8 S++EI+SK Sbjct: 656 SLMEILSK 663>XP_006721483 Length = 1061 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SILEIISK 8 S++EI+SK Sbjct: 740 SLMEILSK 747>XP_006720285 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ILEIISKS 9 I+EI SKS Sbjct: 486 IIEIFSKS 493>XP_005267988 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ILEIISKS 9 I+EI SKS Sbjct: 486 IIEIFSKS 493>XP_005267987 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ILEIISKS 9 I+EI SKS Sbjct: 486 IIEIFSKS 493>XP_006712781 Length = 750 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SILEIISK 8 SILE+I K Sbjct: 560 SILELIKK 567>NP_478144 Length = 873 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ILEIISKS 9 I+EI SKS Sbjct: 593 IIEIFSKS 600Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.127 0.268 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 343,710 Number of extensions: 366 Number of successful extensions: 28 Number of sequences better than 10000.0: 28 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 28 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |