Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_597677 17 4312 NP_056199 17 4312 XP_005248339 17 4312 XP_005248337 17 4312 XP_006714531 17 4312 XP_006714530 17 4312 NP_937762 16 5631 NP_982272 16 5631 NP_001121189 16 5631 NP_001177387 16 5631 NP_001180465 16 5631 NP_056100 16 5631 NP_443066 16 5631 XP_005266731 16 5631 XP_006722494 16 5631 NP_037523 16 7355 XP_006714661 16 7355 XP_006714660 16 7355 NP_062541 15 9605 NP_671494 15 9605 NP_055504 15 9605 NP_001277192 15 9605 NP_006268 15 9605 XP_006712687 15 9605 XP_006712686 15 9605 XP_006712685 15 9605 XP_006712684 15 9605 XP_006712683 15 9605 XP_006712682 15 9605 XP_006712681 15 9605 XP_005246730 15 9605 XP_005246729 15 9605 XP_006712680 15 9605 XP_006712679 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SIAMYDIIA 9 SIAM+DIIA Sbjct: 1300 SIAMHDIIA 1308>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SIAMYDIIA 9 SIAM+DIIA Sbjct: 1300 SIAMHDIIA 1308>NP_597677 Length = 2804 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMYDIIA 9 AMYDII+ Sbjct: 343 AMYDIIS 349>NP_056199 Length = 2697 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMYDIIA 9 AMYDII+ Sbjct: 343 AMYDIIS 349>XP_005248339 Length = 2584 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMYDIIA 9 AMYDII+ Sbjct: 123 AMYDIIS 129>XP_005248337 Length = 2698 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMYDIIA 9 AMYDII+ Sbjct: 343 AMYDIIS 349>XP_006714531 Length = 2738 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMYDIIA 9 AMYDII+ Sbjct: 343 AMYDIIS 349>XP_006714530 Length = 2755 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AMYDIIA 9 AMYDII+ Sbjct: 343 AMYDIIS 349>NP_937762 Length = 3333 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 IAMYDIIA 9 IAMY+++A Sbjct: 1009 IAMYELLA 1016>NP_982272 Length = 2099 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 SIA+YD+ Sbjct: 287 SIALYDV 293>NP_001121189 Length = 3277 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 IAMYDIIA 9 IAMY+++A Sbjct: 1009 IAMYELLA 1016>NP_001177387 Length = 1999 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 SIA+YD+ Sbjct: 219 SIALYDV 225>NP_001180465 Length = 2031 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 SIA+YD+ Sbjct: 219 SIALYDV 225>NP_056100 Length = 1490 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YDI Sbjct: 1376 SVALYDI 1382>NP_443066 Length = 1457 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YDI Sbjct: 1343 SVALYDI 1349>XP_005266731 Length = 982 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YDI Sbjct: 868 SVALYDI 874>XP_006722494 Length = 1490 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YDI Sbjct: 1376 SVALYDI 1382>NP_037523 Length = 866 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SIAMYDII 8 S+A+YD I Sbjct: 691 SVALYDAI 698>XP_006714661 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SIAMYDII 8 S+A+YD I Sbjct: 311 SVALYDAI 318>XP_006714660 Length = 774 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SIAMYDII 8 S+A+YD I Sbjct: 691 SVALYDAI 698>NP_062541 Length = 1670 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 IAMYDIIA 9 IAMYD A Sbjct: 1106 IAMYDYAA 1113>NP_671494 Length = 1249 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 IAMYDIIA 9 IAMYD A Sbjct: 1133 IAMYDYAA 1140>NP_055504 Length = 2186 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 426 SVALYDL 432>NP_001277192 Length = 2180 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 420 SVALYDL 426>NP_006268 Length = 1697 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 IAMYDIIA 9 IAMYD A Sbjct: 1133 IAMYDYAA 1140>XP_006712687 Length = 2166 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 439 SVALYDL 445>XP_006712686 Length = 2173 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 439 SVALYDL 445>XP_006712685 Length = 2175 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 439 SVALYDL 445>XP_006712684 Length = 2189 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 420 SVALYDL 426>XP_006712683 Length = 2195 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 426 SVALYDL 432>XP_006712682 Length = 2199 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 439 SVALYDL 445>XP_006712681 Length = 2199 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 439 SVALYDL 445>XP_005246730 Length = 2199 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 439 SVALYDL 445>XP_005246729 Length = 2201 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 439 SVALYDL 445>XP_006712680 Length = 2206 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 439 SVALYDL 445>XP_006712679 Length = 2208 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 SIAMYDI 7 S+A+YD+ Sbjct: 439 SVALYDL 445Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.141 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 341,970 Number of extensions: 297 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |