Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_003961004 18 1935 XP_005276139 18 1935 NP_001230891 18 1935 NP_002115 16 5631 NP_002112 16 5631 NP_653252 16 5631 XP_005251225 16 5631 XP_006716483 16 5631 XP_005251224 16 5631 NP_001230894 16 5631 NP_060868 16 7355 NP_001123616 16 7355 NP_066548 16 7355 NP_001157738 16 7355 XP_005265375 16 7355 NP_001258358 15 9605 NP_060136 15 9605 NP_001258357 15 9605 NP_055862 15 9605 NP_001258356 15 9605 NP_001131022 15 9605 XP_006724828 15 9605 XP_006712913 15 9605 XP_005246197 15 9605 XP_005246196 15 9605 XP_005246195 15 9605 XP_005246194 15 9605 XP_005246184 15 9605 XP_005246181 15 9605 XP_005246180 15 9605 XP_005246178 15 9605 XP_006712905 15 9605 XP_006712904 15 9605 XP_005246174 15 9605 XP_006712903 15 9605 XP_005246173 15 9605 XP_005246171 15 9605 XP_005246170 15 9605 XP_005246169 15 9605 XP_005245845 15 9605 XP_005245844 15 9605>XP_003961004 Length = 293 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GSFRAVTL 9 G FRAVTL Sbjct: 109 GEFRAVTL 116>XP_005276139 Length = 313 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GSFRAVTL 9 G FRAVTL Sbjct: 109 GEFRAVTL 116>NP_001230891 Length = 261 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GSFRAVTL 9 G FRAVTL Sbjct: 77 GEFRAVTL 84>NP_002115 Length = 266 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GSFRAVT 8 G FRAVT Sbjct: 74 GEFRAVT 80>NP_002112 Length = 258 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GSFRAVT 8 G FRAVT Sbjct: 72 GEFRAVT 78>NP_653252 Length = 1463 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GSFRAVT 8 G FRAVT Sbjct: 1306 GQFRAVT 1312>XP_005251225 Length = 848 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GSFRAVT 8 G FRAVT Sbjct: 691 GQFRAVT 697>XP_006716483 Length = 1367 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GSFRAVT 8 G FRAVT Sbjct: 1210 GQFRAVT 1216>XP_005251224 Length = 1439 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GSFRAVT 8 G FRAVT Sbjct: 1282 GQFRAVT 1288>NP_001230894 Length = 266 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GSFRAVT 8 G FRAVT Sbjct: 74 GEFRAVT 80>NP_060868 Length = 1091 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GSFRAVTL 9 GSF+ +TL Sbjct: 893 GSFKRITL 900>NP_001123616 Length = 1303 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SGSFRAV 7 SGSFR V Sbjct: 1277 SGSFRCV 1283>NP_066548 Length = 1256 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SGSFRAV 7 SGSFR V Sbjct: 1230 SGSFRCV 1236>NP_001157738 Length = 1139 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SGSFRAV 7 SGSFR V Sbjct: 1113 SGSFRCV 1119>XP_005265375 Length = 1085 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GSFRAVTL 9 GSF+ +TL Sbjct: 887 GSFKRITL 894>NP_001258358 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGSFRAVTL 9 SGSF+A+ L Sbjct: 103 SGSFQALGL 111>NP_060136 Length = 737 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SG+ R +TL Sbjct: 677 SGTLRGITL 685>NP_001258357 Length = 992 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGSFRAVTL 9 SGSF+A+ L Sbjct: 125 SGSFQALGL 133>NP_055862 Length = 993 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGSFRAVTL 9 SGSF+A+ L Sbjct: 125 SGSFQALGL 133>NP_001258356 Length = 992 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGSFRAVTL 9 SGSF+A+ L Sbjct: 125 SGSFQALGL 133>NP_001131022 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 159 SGSYRASVL 167>XP_006724828 Length = 688 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SG+ R +TL Sbjct: 628 SGTLRGITL 636>XP_006712913 Length = 648 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 167 SGSYRASVL 175>XP_005246197 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 180 SGSYRASVL 188>XP_005246196 Length = 599 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 180 SGSYRASVL 188>XP_005246195 Length = 625 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 180 SGSYRASVL 188>XP_005246194 Length = 661 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 180 SGSYRASVL 188>XP_005246184 Length = 933 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 180 SGSYRASVL 188>XP_005246181 Length = 955 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 116 SGSYRASVL 124>XP_005246180 Length = 957 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 180 SGSYRASVL 188>XP_005246178 Length = 965 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 126 SGSYRASVL 134>XP_006712905 Length = 985 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 146 SGSYRASVL 154>XP_006712904 Length = 987 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 148 SGSYRASVL 156>XP_005246174 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 180 SGSYRASVL 188>XP_006712903 Length = 997 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 158 SGSYRASVL 166>XP_005246173 Length = 998 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 159 SGSYRASVL 167>XP_005246171 Length = 1006 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 167 SGSYRASVL 175>XP_005246170 Length = 1009 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 170 SGSYRASVL 178>XP_005246169 Length = 1019 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGSFRAVTL 9 SGS+RA L Sbjct: 180 SGSYRASVL 188>XP_005245845 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGSFRAVTL 9 SGSF+A+ L Sbjct: 125 SGSFQALGL 133>XP_005245844 Length = 996 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGSFRAVTL 9 SGSF+A+ L Sbjct: 125 SGSFQALGL 133Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.130 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 379,689 Number of extensions: 570 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |