Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_036462 18 1935 XP_005269721 18 1935 NP_031371 17 3301 XP_005266819 17 3301 XP_006722604 17 3301 NP_003226 17 4312 XP_005251100 17 4312 XP_006716686 17 4312 XP_005251099 17 4312 XP_005251097 17 4312 XP_005251095 17 4312 XP_006716685 17 4312 XP_005276293 16 5631 XP_005264833 16 5631 XP_005276006 16 5631 NP_116250 16 7355 NP_112210 16 7355 NP_001229577 16 7355 NP_001245207 16 7355 NP_001245205 16 7355 NP_001245206 16 7355 XP_006715649 16 7355 XP_006715648 16 7355 XP_005266874 16 7355 XP_005266873 16 7355 XP_005248994 16 7355 XP_005248993 16 7355 XP_005248992 16 7355 XP_005248990 16 7355 XP_005248991 16 7355 XP_006715084 16 7355 NP_443145 16 7355 NP_001248344 15 9605 NP_694534 15 9605 NP_008871 15 9605 NP_001248343 15 9605 NP_001137236 15 9605 NP_001137235 15 9605 XP_006719213 15 9605 XP_006719212 15 9605 NP_002999 15 9605>NP_036462 Length = 2073 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 SGQS SSQK Sbjct: 501 SGQSPSSQK 509>XP_005269721 Length = 2073 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 SGQS SSQK Sbjct: 501 SGQSPSSQK 509>NP_031371 Length = 1845 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +G SLSSQK Sbjct: 1710 AGPSLSSQK 1718>XP_005266819 Length = 1790 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +G SLSSQK Sbjct: 1655 AGPSLSSQK 1663>XP_006722604 Length = 1847 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +G SLSSQK Sbjct: 1712 AGPSLSSQK 1720>NP_003226 Length = 2768 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 QSLSSQK 9 QSLSSQK Sbjct: 1870 QSLSSQK 1876>XP_005251100 Length = 2103 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 QSLSSQK 9 QSLSSQK Sbjct: 1870 QSLSSQK 1876>XP_006716686 Length = 2111 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 QSLSSQK 9 QSLSSQK Sbjct: 1870 QSLSSQK 1876>XP_005251099 Length = 2121 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 QSLSSQK 9 QSLSSQK Sbjct: 1870 QSLSSQK 1876>XP_005251097 Length = 2178 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 QSLSSQK 9 QSLSSQK Sbjct: 1870 QSLSSQK 1876>XP_005251095 Length = 2704 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 QSLSSQK 9 QSLSSQK Sbjct: 1806 QSLSSQK 1812>XP_006716685 Length = 2747 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 QSLSSQK 9 QSLSSQK Sbjct: 1870 QSLSSQK 1876>XP_005276293 Length = 695 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SGQSLSSQK 9 SGQ LSS K Sbjct: 369 SGQLLSSSK 377>XP_005264833 Length = 441 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SGQSLSSQK 9 SGQ LSS K Sbjct: 369 SGQLLSSSK 377>XP_005276006 Length = 695 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SGQSLSSQK 9 SGQ LSS K Sbjct: 369 SGQLLSSSK 377>NP_116250 Length = 654 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 S QSL++QK Sbjct: 238 SSQSLAAQK 246>NP_112210 Length = 580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +GQSLSS + Sbjct: 180 NGQSLSSSQ 188>NP_001229577 Length = 580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +GQSLSS + Sbjct: 180 NGQSLSSSQ 188>NP_001245207 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GQSLSSQ 8 G+SLSSQ Sbjct: 352 GESLSSQ 358>NP_001245205 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GQSLSSQ 8 G+SLSSQ Sbjct: 352 GESLSSQ 358>NP_001245206 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GQSLSSQ 8 G+SLSSQ Sbjct: 352 GESLSSQ 358>XP_006715649 Length = 584 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 S QSL++QK Sbjct: 168 SSQSLAAQK 176>XP_006715648 Length = 616 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 S QSL++QK Sbjct: 238 SSQSLAAQK 246>XP_005266874 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GQSLSSQ 8 G+SLSSQ Sbjct: 352 GESLSSQ 358>XP_005266873 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GQSLSSQ 8 G+SLSSQ Sbjct: 352 GESLSSQ 358>XP_005248994 Length = 488 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +GQSLSS + Sbjct: 88 NGQSLSSSQ 96>XP_005248993 Length = 557 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +GQSLSS + Sbjct: 88 NGQSLSSSQ 96>XP_005248992 Length = 649 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +GQSLSS + Sbjct: 180 NGQSLSSSQ 188>XP_005248990 Length = 649 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +GQSLSS + Sbjct: 180 NGQSLSSSQ 188>XP_005248991 Length = 649 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +GQSLSS + Sbjct: 180 NGQSLSSSQ 188>XP_006715084 Length = 650 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SGQSLSSQK 9 +GQSLSS + Sbjct: 181 NGQSLSSSQ 189>NP_443145 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GQSLSSQ 8 G+SLSSQ Sbjct: 352 GESLSSQ 358>NP_001248344 Length = 753 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SGQSLSS 7 SG+SLSS Sbjct: 110 SGESLSS 116>NP_694534 Length = 750 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SGQSLSS 7 SG+SLSS Sbjct: 107 SGESLSS 113>NP_008871 Length = 763 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SGQSLSS 7 SG+SLSS Sbjct: 120 SGESLSS 126>NP_001248343 Length = 642 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SGQSLSS 7 SG+SLSS Sbjct: 107 SGESLSS 113>NP_001137236 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GQSLSSQK 9 GQ SSQK Sbjct: 25 GQDTSSQK 32>NP_001137235 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GQSLSSQK 9 GQ SSQK Sbjct: 25 GQDTSSQK 32>XP_006719213 Length = 750 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SGQSLSS 7 SG+SLSS Sbjct: 107 SGESLSS 113>XP_006719212 Length = 750 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SGQSLSS 7 SG+SLSS Sbjct: 107 SGESLSS 113>NP_002999 Length = 582 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SGQSLSSQ 8 SG+ LSSQ Sbjct: 151 SGKGLSSQ 158Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.277 0.0947 0.205 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 406,964 Number of extensions: 678 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |