Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006197 18 1135 XP_006714104 18 1135 XP_005265800 18 1135 XP_006714103 18 1135 XP_006714102 18 1135 NP_066925 18 1935 NP_001159575 18 1935 NP_004229 17 4312 NP_001271144 17 4312 NP_001271143 17 4312 NP_001271145 17 4312 XP_006712916 17 4312 XP_005247020 17 4312 XP_005247019 17 4312 XP_006712915 17 4312 XP_005247018 17 4312 XP_005247017 17 4312 XP_005247015 17 4312 XP_005247014 17 4312 XP_005247013 17 4312 XP_005247012 17 4312 XP_005247011 17 4312 NP_001161820 16 5631 NP_001161819 16 5631 NP_683759 16 5631 NP_060514 16 5631 NP_002045 16 5631 NP_056382 16 5631 XP_005254096 16 5631 XP_005254095 16 5631 NP_619642 16 7355 NP_803884 16 7355 NP_000889 16 7355 XP_005272665 16 7355 XP_005272664 16 7355 NP_543009 15 9605 NP_001072980 15 9605 NP_071379 15 9605 XP_005260849 15 9605 XP_006721007 15 9605 XP_005255620 15 9605 NP_942093 15 9605>NP_006197 Length = 1089 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGLFVMVLE 9 SGLFV VLE Sbjct: 78 SGLFVTVLE 86>XP_006714104 Length = 832 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGLFVMVLE 9 SGLFV VLE Sbjct: 103 SGLFVTVLE 111>XP_005265800 Length = 1089 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGLFVMVLE 9 SGLFV VLE Sbjct: 78 SGLFVTVLE 86>XP_006714103 Length = 1111 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGLFVMVLE 9 SGLFV VLE Sbjct: 100 SGLFVTVLE 108>XP_006714102 Length = 1114 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SGLFVMVLE 9 SGLFV VLE Sbjct: 103 SGLFVTVLE 111>NP_066925 Length = 252 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 +GLFVMVL Sbjct: 202 AGLFVMVL 209>NP_001159575 Length = 195 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 +GLFVMVL Sbjct: 145 AGLFVMVL 152>NP_004229 Length = 1992 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 665 SGMFIMVV 672>NP_001271144 Length = 2025 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 671 SGMFIMVV 678>NP_001271143 Length = 2040 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 713 SGMFIMVV 720>NP_001271145 Length = 1722 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 368 SGMFIMVV 375>XP_006712916 Length = 1998 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 671 SGMFIMVV 678>XP_005247020 Length = 2013 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 713 SGMFIMVV 720>XP_005247019 Length = 2025 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 671 SGMFIMVV 678>XP_006712915 Length = 2026 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 671 SGMFIMVV 678>XP_005247018 Length = 2026 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 671 SGMFIMVV 678>XP_005247017 Length = 2039 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 684 SGMFIMVV 691>XP_005247015 Length = 2041 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 713 SGMFIMVV 720>XP_005247014 Length = 2063 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 713 SGMFIMVV 720>XP_005247013 Length = 2067 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 713 SGMFIMVV 720>XP_005247012 Length = 2068 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 713 SGMFIMVV 720>XP_005247011 Length = 2068 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SGLFVMVL 8 SG+F+MV+ Sbjct: 713 SGMFIMVV 720>NP_001161820 Length = 391 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGLFVMVLE 9 SG FV V+E Sbjct: 377 SGFFVAVIE 385>NP_001161819 Length = 470 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGLFVMVLE 9 SG FV V+E Sbjct: 415 SGFFVAVIE 423>NP_683759 Length = 466 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGLFVMVLE 9 SG FV V+E Sbjct: 415 SGFFVAVIE 423>NP_060514 Length = 429 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SGLFVMVLE 9 SG FV V+E Sbjct: 415 SGFFVAVIE 423>NP_002045 Length = 180 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SGLFVMVLE 9 +GLFVM+++ Sbjct: 8 AGLFVMLVQ 16>NP_056382 Length = 958 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SGLFVMVLE 9 +GLFV+V++ Sbjct: 682 AGLFVLVMK 690>XP_005254096 Length = 958 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SGLFVMVLE 9 +GLFV+V++ Sbjct: 682 AGLFVLVMK 690>XP_005254095 Length = 958 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SGLFVMVLE 9 +GLFV+V++ Sbjct: 682 AGLFVLVMK 690>NP_619642 Length = 841 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SGLFVMV 7 +GLFVM+ Sbjct: 679 AGLFVMI 685>NP_803884 Length = 587 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 SGLFVMV 7 +GLFVM+ Sbjct: 425 AGLFVMI 431>NP_000889 Length = 520 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SGLFVMVLE 9 SGL V+VLE Sbjct: 26 SGLNVVVLE 34>XP_005272665 Length = 504 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SGLFVMVLE 9 SGL V+VLE Sbjct: 10 SGLNVVVLE 18>XP_005272664 Length = 504 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SGLFVMVLE 9 SGL V+VLE Sbjct: 10 SGLNVVVLE 18>NP_543009 Length = 363 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SGLFVMVL 8 +GL VMVL Sbjct: 9 AGLLVMVL 16>NP_001072980 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GLFVMVL 8 G FVMVL Sbjct: 61 GCFVMVL 67>NP_071379 Length = 776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FVMVLE 9 FVMVLE Sbjct: 359 FVMVLE 364>XP_005260849 Length = 587 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FVMVLE 9 FVMVLE Sbjct: 170 FVMVLE 175>XP_006721007 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GLFVMVL 8 G FVMVL Sbjct: 61 GCFVMVL 67>XP_005255620 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 GLFVMVL 8 G FVMVL Sbjct: 61 GCFVMVL 67>NP_942093 Length = 776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FVMVLE 9 FVMVLE Sbjct: 359 FVMVLE 364Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.150 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 319,750 Number of extensions: 337 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |