Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 19 665 NP_473368 17 4312 NP_001013007 17 4312 XP_006714546 17 4312 NP_001190187 16 5631 NP_079229 16 5631 XP_005253995 16 5631 XP_006719669 16 5631 NP_001038944 16 5631 NP_001277131 16 7355 NP_849191 16 7355 NP_001092105 16 7355 NP_001640 16 7355 XP_005274557 16 7355 NP_002212 15 9605 NP_060821 15 9605 XP_005269081 15 9605>NP_055365 Length = 1032 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SERIMLDIL 9 SERI+LDIL Sbjct: 313 SERILLDIL 321>NP_473368 Length = 492 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SERIMLDIL 9 SE+I++DI+ Sbjct: 349 SEKILIDII 357>NP_001013007 Length = 153 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ERIMLDIL 9 ERI LDIL Sbjct: 85 ERISLDIL 92>XP_006714546 Length = 504 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SERIMLDIL 9 SE+I++DI+ Sbjct: 361 SEKILIDII 369>NP_001190187 Length = 430 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SERIMLDIL 9 S RI+LDIL Sbjct: 400 SLRILLDIL 408>NP_079229 Length = 972 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SERIMLDIL 9 +ER++LD+L Sbjct: 614 TERMLLDLL 622>XP_005253995 Length = 836 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SERIMLDIL 9 +ER++LD+L Sbjct: 478 TERMLLDLL 486>XP_006719669 Length = 944 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SERIMLDIL 9 +ER++LD+L Sbjct: 586 TERMLLDLL 594>NP_001038944 Length = 112 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ERIMLDIL 9 E++MLDI+ Sbjct: 18 EKVMLDIV 25>NP_001277131 Length = 869 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ERIMLDI 8 +RIMLDI Sbjct: 504 KRIMLDI 510>NP_849191 Length = 994 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ERIMLDI 8 +RIMLDI Sbjct: 629 KRIMLDI 635>NP_001092105 Length = 993 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ERIMLDI 8 +RIMLDI Sbjct: 629 KRIMLDI 635>NP_001640 Length = 1616 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ERIMLDIL 9 ERI+ DIL Sbjct: 1556 ERIVFDIL 1563>XP_005274557 Length = 1615 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ERIMLDIL 9 ERI+ DIL Sbjct: 1555 ERIVFDIL 1562>NP_002212 Length = 946 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ERIMLDIL 9 +R+M+D+L Sbjct: 701 DRLMVDVL 708>NP_060821 Length = 1430 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 SERIMLDIL 9 SE++ +D+L Sbjct: 882 SEKVFVDVL 890>XP_005269081 Length = 1389 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 SERIMLDIL 9 SE++ +D+L Sbjct: 882 SEKVFVDVL 890Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.151 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 417,214 Number of extensions: 565 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |