Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004110 18 1135 NP_000213 17 2528 NP_001087241 17 2528 XP_005265799 17 2528 XP_005265798 17 2528 XP_005265797 17 2528 NP_006197 16 5631 NP_002600 16 5631 NP_001026859 16 5631 XP_005268521 16 5631 XP_005272075 16 5631 XP_006714104 16 5631 XP_005265800 16 5631 XP_006714103 16 5631 XP_006714102 16 5631 NP_057688 16 5631 NP_005202 16 7355 NP_001275634 16 7355 NP_872114 16 7355 NP_006366 16 7355 NP_001268665 16 7355 XP_005262412 16 7355 XP_005262411 16 7355 NP_001175 15 9605 NP_001230280 15 9605 NP_057202 15 9605 NP_002966 15 9605 XP_005250069 15 9605 XP_005250068 15 9605 XP_005250067 15 9605 XP_006712935 15 9605 XP_006712934 15 9605 XP_006712933 15 9605 NP_852118 15 9605>NP_004110 Length = 993 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 SEREALMS Sbjct: 653 SEREALMS 660>NP_000213 Length = 976 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 +EREALMS Sbjct: 632 TEREALMS 639>NP_001087241 Length = 972 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 +EREALMS Sbjct: 628 TEREALMS 635>XP_005265799 Length = 973 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 +EREALMS Sbjct: 629 TEREALMS 636>XP_005265798 Length = 976 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 +EREALMS Sbjct: 633 TEREALMS 640>XP_005265797 Length = 977 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 +EREALMS Sbjct: 633 TEREALMS 640>NP_006197 Length = 1089 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 SE++ALMS Sbjct: 636 SEKQALMS 643>NP_002600 Length = 1106 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 SE++ALMS Sbjct: 643 SEKQALMS 650>NP_001026859 Length = 795 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 S+RE+LMS Sbjct: 678 SQRESLMS 685>XP_005268521 Length = 1042 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 SE++ALMS Sbjct: 579 SEKQALMS 586>XP_005272075 Length = 1561 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SEREALMSV 9 SE+EA+M V Sbjct: 804 SEKEAMMMV 812>XP_006714104 Length = 832 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 SE++ALMS Sbjct: 661 SEKQALMS 668>XP_005265800 Length = 1089 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 SE++ALMS Sbjct: 636 SEKQALMS 643>XP_006714103 Length = 1111 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 SE++ALMS Sbjct: 658 SEKQALMS 665>XP_006714102 Length = 1114 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 SEREALMS 8 SE++ALMS Sbjct: 661 SEKQALMS 668>NP_057688 Length = 1761 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SEREALMSV 9 SE+EA+M V Sbjct: 1004 SEKEAMMMV 1012>NP_005202 Length = 972 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 EREALMS 8 E+EALMS Sbjct: 626 EKEALMS 632>NP_001275634 Length = 972 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 EREALMS 8 E+EALMS Sbjct: 626 EKEALMS 632>NP_872114 Length = 610 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SEREAL+ Sbjct: 531 SEREALL 537>NP_006366 Length = 581 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SEREAL+ Sbjct: 502 SEREALL 508>NP_001268665 Length = 581 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SEREAL+ Sbjct: 502 SEREALL 508>XP_005262412 Length = 608 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SEREAL+ Sbjct: 529 SEREALL 535>XP_005262411 Length = 610 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SEREAL+ Sbjct: 531 SEREALL 537>NP_001175 Length = 2644 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 EREALMSV 9 +RE LMSV Sbjct: 2546 QREPLMSV 2553>NP_001230280 Length = 639 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SER+ALM Sbjct: 252 SERKALM 258>NP_057202 Length = 625 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SER+ALM Sbjct: 252 SERKALM 258>NP_002966 Length = 323 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 EREALM 7 EREALM Sbjct: 42 EREALM 47>XP_005250069 Length = 590 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SER+ALM Sbjct: 252 SERKALM 258>XP_005250068 Length = 615 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SER+ALM Sbjct: 228 SERKALM 234>XP_005250067 Length = 638 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SEREALM 7 SER+ALM Sbjct: 251 SERKALM 257>XP_006712935 Length = 977 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SEREALMS 8 SE+EAL S Sbjct: 855 SEKEALQS 862>XP_006712934 Length = 1583 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SEREALMS 8 SE+EAL S Sbjct: 751 SEKEALQS 758>XP_006712933 Length = 1687 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SEREALMS 8 SE+EAL S Sbjct: 855 SEKEALQS 862>NP_852118 Length = 1684 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SEREALMS 8 SE+EAL S Sbjct: 852 SEKEALQS 859Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.302 0.112 0.242 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 330,862 Number of extensions: 263 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |