Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 19 869 XP_006713721 19 869 NP_116147 17 2528 XP_005249373 17 3301 NP_847894 16 5631 NP_001268232 16 5631 NP_006406 16 5631 NP_005373 16 5631 NP_004271 16 5631 NP_061026 16 5631 XP_005260806 16 5631 NP_004514 16 7355 NP_001417 16 7355 NP_001035545 16 7355 NP_060888 15 9605 NP_001035518 15 9605 NP_004848 15 9605 NP_001129575 15 9605 NP_071933 15 9605 NP_001265641 15 9605 NP_004454 15 9605 NP_001182073 15 9605 XP_005267912 15 9605 XP_005267911 15 9605 XP_005267909 15 9605 XP_005267908 15 9605 XP_005252695 15 9605 XP_005247005 15 9605 XP_006712901 15 9605 XP_005247004 15 9605 XP_005247003 15 9605 XP_005247002 15 9605 NP_006014 15 9605>NP_006209 Length = 1068 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SEITVQEKD 9 SEIT QEKD Sbjct: 541 SEITEQEKD 549>XP_006713721 Length = 1068 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SEITVQEKD 9 SEIT QEKD Sbjct: 541 SEITEQEKD 549>NP_116147 Length = 110 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 EITVQEKD 9 E T+QEKD Sbjct: 74 ECTIQEKD 81>XP_005249373 Length = 7723 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 SEITVQEK 8 SEIT QEK Sbjct: 166 SEITFQEK 173>NP_847894 Length = 143 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SEITVQEKD 9 S++TV+EK+ Sbjct: 50 SDLTVKEKE 58>NP_001268232 Length = 513 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SEITVQEKD 9 S++TV+EK+ Sbjct: 50 SDLTVKEKE 58>NP_006406 Length = 473 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SEITVQEKD 9 S++TV+EK+ Sbjct: 50 SDLTVKEKE 58>NP_005373 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SEITVQEKD 9 S ITV+ KD Sbjct: 252 SHITVERKD 260>NP_004271 Length = 174 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EITVQEKD 9 ++TVQEK+ Sbjct: 130 DLTVQEKE 137>NP_061026 Length = 387 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EITVQEKD 9 E+TV +KD Sbjct: 346 EVTVHQKD 353>XP_005260806 Length = 281 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EITVQEKD 9 E+TV +KD Sbjct: 240 EVTVHQKD 247>NP_004514 Length = 1056 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 EITVQEKD 9 EITV KD Sbjct: 201 EITVHNKD 208>NP_001417 Length = 392 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SEITVQEKD 9 S TVQ+KD Sbjct: 381 STTTVQDKD 389>NP_001035545 Length = 832 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ITVQEKD 9 ITVQ KD Sbjct: 231 ITVQRKD 237>NP_060888 Length = 599 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SEITVQEK 8 SE+T+Q++ Sbjct: 456 SEVTIQQE 463>NP_001035518 Length = 567 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SEITVQEK 8 SE+T+Q++ Sbjct: 424 SEVTIQQE 431>NP_004848 Length = 427 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SEITVQEKD 9 SEI V+ KD Sbjct: 6 SEIHVENKD 14>NP_001129575 Length = 1108 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SEITVQEKD 9 SEI V +KD Sbjct: 418 SEIFVSQKD 426>NP_071933 Length = 314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EITVQEKD 9 EIT++ KD Sbjct: 125 EITLENKD 132>NP_001265641 Length = 311 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EITVQEKD 9 EIT++ KD Sbjct: 125 EITLENKD 132>NP_004454 Length = 961 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 EITVQEK 8 E+TVQ+K Sbjct: 367 ELTVQQK 373>NP_001182073 Length = 993 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SEITVQEKD 9 +++TV++KD Sbjct: 897 ADLTVKDKD 905>XP_005267912 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SEITVQEK 8 SE+T+Q++ Sbjct: 393 SEVTIQQE 400>XP_005267911 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SEITVQEK 8 SE+T+Q++ Sbjct: 393 SEVTIQQE 400>XP_005267909 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SEITVQEK 8 SE+T+Q++ Sbjct: 425 SEVTIQQE 432>XP_005267908 Length = 600 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 SEITVQEK 8 SE+T+Q++ Sbjct: 457 SEVTIQQE 464>XP_005252695 Length = 304 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SEITVQEKD 9 SE+ QE+D Sbjct: 243 SEVDAQEQD 251>XP_005247005 Length = 994 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SEITVQEKD 9 +++TV++KD Sbjct: 915 ADLTVKDKD 923>XP_006712901 Length = 997 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SEITVQEKD 9 +++TV++KD Sbjct: 915 ADLTVKDKD 923>XP_005247004 Length = 1011 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SEITVQEKD 9 +++TV++KD Sbjct: 915 ADLTVKDKD 923>XP_005247003 Length = 1056 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SEITVQEKD 9 +++TV++KD Sbjct: 897 ADLTVKDKD 905>XP_005247002 Length = 1074 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 SEITVQEKD 9 +++TV++KD Sbjct: 915 ADLTVKDKD 923>NP_006014 Length = 336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SEITVQEKD 9 SE+ QE+D Sbjct: 275 SEVDAQEQD 283Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.290 0.113 0.255 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 588,615 Number of extensions: 1151 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |