Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005219 17 3301 NP_001677 17 4312 NP_056021 17 4312 XP_006720504 17 4312 NP_058544 16 7355 NP_001139433 16 7355 NP_005063 16 7355 NP_001139436 16 7355 NP_001139435 16 7355 NP_001139434 16 7355 XP_005252109 16 7355 NP_071899 15 9605 NP_003808 15 9605 NP_001132929 15 9605 NP_001010906 15 9605 NP_113627 15 9605 NP_055049 15 9605 XP_005273730 15 9605 XP_005273729 15 9605 XP_005273728 15 9605 XP_005273727 15 9605 XP_005273726 15 9605 XP_005273725 15 9605 XP_005273560 15 9605 XP_005273559 15 9605 XP_005273558 15 9605 NP_078799 15 9605>NP_005219 Length = 1210 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SEISSILGK 9 SEISSIL K Sbjct: 921 SEISSILEK 929>NP_001677 Length = 529 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SEISSILGK 9 SE+S++LG+ Sbjct: 316 SEVSALLGR 324>NP_056021 Length = 916 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 EISSILGK 9 EIS +LGK Sbjct: 619 EISQVLGK 626>XP_006720504 Length = 831 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 EISSILGK 9 EIS +LGK Sbjct: 619 EISQVLGK 626>NP_058544 Length = 594 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ISSILGK 9 +SSILGK Sbjct: 209 LSSILGK 215>NP_001139433 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 ++SS+LGK Sbjct: 78 KVSSLLGK 85>NP_005063 Length = 1085 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 ++SS+LGK Sbjct: 78 KVSSLLGK 85>NP_001139436 Length = 1054 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 ++SS+LGK Sbjct: 47 KVSSLLGK 54>NP_001139435 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 ++SS+LGK Sbjct: 72 KVSSLLGK 79>NP_001139434 Length = 1087 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 ++SS+LGK Sbjct: 80 KVSSLLGK 87>XP_005252109 Length = 448 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ISSILGK 9 +SSILGK Sbjct: 63 LSSILGK 69>NP_071899 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SEISSILGK 9 +E+S +LGK Sbjct: 96 AELSKMLGK 104>NP_003808 Length = 754 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 E+SS+LG+ Sbjct: 565 ELSSLLGE 572>NP_001132929 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SEISSILGK 9 SEIS LG+ Sbjct: 26 SEISGFLGQ 34>NP_001010906 Length = 796 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 EISSILG 8 EIS+ILG Sbjct: 636 EISAILG 642>NP_113627 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SEISSILGK 9 +E+S +LGK Sbjct: 73 AELSKMLGK 81>NP_055049 Length = 261 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ISSILGK 9 ISSI+GK Sbjct: 154 ISSIVGK 160>XP_005273730 Length = 749 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 E+SS+LG+ Sbjct: 565 ELSSLLGE 572>XP_005273729 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 E+SS+LG+ Sbjct: 565 ELSSLLGE 572>XP_005273728 Length = 762 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 E+SS+LG+ Sbjct: 565 ELSSLLGE 572>XP_005273727 Length = 776 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 E+SS+LG+ Sbjct: 565 ELSSLLGE 572>XP_005273726 Length = 783 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 E+SS+LG+ Sbjct: 565 ELSSLLGE 572>XP_005273725 Length = 784 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EISSILGK 9 E+SS+LG+ Sbjct: 565 ELSSLLGE 572>XP_005273560 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 EISSILG 8 EIS+ILG Sbjct: 512 EISAILG 518>XP_005273559 Length = 701 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 EISSILG 8 EIS+ILG Sbjct: 541 EISAILG 547>XP_005273558 Length = 796 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 EISSILG 8 EIS+ILG Sbjct: 636 EISAILG 642>NP_078799 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SEISSILG 8 SE+S +LG Sbjct: 371 SEVSELLG 378Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.299 0.123 0.280 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 380,721 Number of extensions: 745 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |