Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 19 869 NP_000170 19 869 NP_001268422 19 869 NP_001268423 19 869 XP_005264328 19 869 NP_877439 16 7355 NP_000432 15 9605 NP_003881 15 9605 NP_001129284 15 9605 NP_067061 15 9605 XP_006725214 15 9605 XP_006725213 15 9605 XP_006725212 15 9605 XP_005253515 15 9605 XP_005253514 15 9605 XP_005253513 15 9605 XP_005250483 15 9605 XP_006716087 15 9605 XP_005250482 15 9605 NP_001129283 15 9605>NP_001268421 Length = 1230 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SDAVSTTRS 9 SD VSTTRS Sbjct: 584 SDTVSTTRS 592>NP_000170 Length = 1360 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SDAVSTTRS 9 SD VSTTRS Sbjct: 714 SDTVSTTRS 722>NP_001268422 Length = 1058 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SDAVSTTRS 9 SD VSTTRS Sbjct: 412 SDTVSTTRS 420>NP_001268423 Length = 1058 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SDAVSTTRS 9 SD VSTTRS Sbjct: 412 SDTVSTTRS 420>XP_005264328 Length = 1261 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SDAVSTTRS 9 SD VSTTRS Sbjct: 615 SDTVSTTRS 623>NP_877439 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SDAVSTTRS 9 SD+V TTR+ Sbjct: 626 SDSVFTTRN 634>NP_000432 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDAVST + Sbjct: 606 SDAVSTNNA 614>NP_003881 Length = 5405 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 S AVS TRS Sbjct: 2123 SQAVSYTRS 2131Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 S AVS TRS Sbjct: 3324 SQAVSYTRS 3332Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 S AVS TRS Sbjct: 4525 SQAVSYTRS 4533>NP_001129284 Length = 221 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDA STT S Sbjct: 120 SDAHSTTSS 128>NP_067061 Length = 221 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDA STT S Sbjct: 120 SDAHSTTSS 128>XP_006725214 Length = 221 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDA STT S Sbjct: 120 SDAHSTTSS 128>XP_006725213 Length = 221 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDA STT S Sbjct: 120 SDAHSTTSS 128>XP_006725212 Length = 250 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDA STT S Sbjct: 149 SDAHSTTSS 157>XP_005253515 Length = 221 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDA STT S Sbjct: 120 SDAHSTTSS 128>XP_005253514 Length = 221 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDA STT S Sbjct: 120 SDAHSTTSS 128>XP_005253513 Length = 250 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDA STT S Sbjct: 149 SDAHSTTSS 157>XP_005250483 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDAVST + Sbjct: 193 SDAVSTNNA 201>XP_006716087 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDAVST + Sbjct: 606 SDAVSTNNA 614>XP_005250482 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDAVST + Sbjct: 606 SDAVSTNNA 614>NP_001129283 Length = 221 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SDAVSTTRS 9 SDA STT S Sbjct: 120 SDAHSTTSS 128Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.288 0.0947 0.211 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 264,919 Number of extensions: 329 Number of successful extensions: 22 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |