Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 19 665 NP_000170 19 665 NP_001449 16 5631 NP_001120959 16 5631 NP_001273409 16 5631 NP_055598 16 5631 NP_001273408 16 5631 XP_006725628 16 5631 XP_006725627 16 5631 XP_006720851 16 5631 XP_005254865 16 5631 XP_006715973 16 5631 NP_073594 15 9605 NP_001007103 15 9605 NP_115814 15 9605 XP_005267218 15 9605 XP_006715641 15 9605 XP_006715640 15 9605 XP_006715639 15 9605 XP_005247773 15 9605 XP_006713796 15 9605 XP_005247772 15 9605 XP_005247768 15 9605 XP_006713794 15 9605 XP_005247767 15 9605>NP_001268421 Length = 1230 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SDANEASAR 9 SDAN+ASAR Sbjct: 18 SDANKASAR 26>NP_000170 Length = 1360 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 SDANEASAR 9 SDAN+ASAR Sbjct: 18 SDANKASAR 26>NP_001449 Length = 2725 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DANEASAR 9 DAN+ SAR Sbjct: 374 DANKVSAR 381>NP_001120959 Length = 2692 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DANEASAR 9 DAN+ SAR Sbjct: 374 DANKVSAR 381>NP_001273409 Length = 834 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DANEASA 8 DANEAS+ Sbjct: 344 DANEASS 350>NP_055598 Length = 1023 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DANEASA 8 DANEAS+ Sbjct: 533 DANEASS 539>NP_001273408 Length = 834 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DANEASA 8 DANEAS+ Sbjct: 344 DANEASS 350>XP_006725628 Length = 994 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DANEASA 8 DANEAS+ Sbjct: 504 DANEASS 510>XP_006725627 Length = 1023 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DANEASA 8 DANEAS+ Sbjct: 533 DANEASS 539>XP_006720851 Length = 834 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DANEASA 8 DANEAS+ Sbjct: 344 DANEASS 350>XP_005254865 Length = 994 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DANEASA 8 DANEAS+ Sbjct: 504 DANEASS 510>XP_006715973 Length = 2632 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DANEASAR 9 DAN+ SAR Sbjct: 374 DANKVSAR 381>NP_073594 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NEASAR 9 NEASAR Sbjct: 135 NEASAR 140>NP_001007103 Length = 755 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SDANEASA 8 +DANE+S+ Sbjct: 592 TDANESSS 599>NP_115814 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SDANEASA 8 +DANE+S+ Sbjct: 617 TDANESSS 624>XP_005267218 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SDANEASA 8 +DANE+S+ Sbjct: 617 TDANESSS 624>XP_006715641 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SDANEASA 8 +DANE+S+ Sbjct: 617 TDANESSS 624>XP_006715640 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SDANEASA 8 +DANE+S+ Sbjct: 617 TDANESSS 624>XP_006715639 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 SDANEASA 8 +DANE+S+ Sbjct: 652 TDANESSS 659>XP_005247773 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NEASAR 9 NEASAR Sbjct: 176 NEASAR 181>XP_006713796 Length = 651 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NEASAR 9 NEASAR Sbjct: 176 NEASAR 181>XP_005247772 Length = 700 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NEASAR 9 NEASAR Sbjct: 176 NEASAR 181>XP_005247768 Length = 794 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NEASAR 9 NEASAR Sbjct: 176 NEASAR 181>XP_006713794 Length = 810 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NEASAR 9 NEASAR Sbjct: 176 NEASAR 181>XP_005247767 Length = 953 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NEASAR 9 NEASAR Sbjct: 176 NEASAR 181Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.283 0.0947 0.215 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 296,898 Number of extensions: 185 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |