Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1935 NP_671714 18 1935 XP_006715890 18 1935 XP_005250160 18 1935 XP_005250159 18 1935 NP_060004 17 3301 NP_001093582 17 3301 NP_149022 17 4312 NP_001122405 16 5631 NP_001122406 16 5631 NP_001273683 16 5631 NP_597734 16 5631 NP_002463 16 5631 NP_004378 16 7355 NP_055510 16 7355 NP_001274359 16 7355 NP_490595 16 7355 NP_001274355 16 7355 NP_001274358 16 7355 NP_003355 16 7355 NP_001274357 16 7355 XP_005256934 16 7355 XP_006721670 16 7355 XP_005249895 16 7355 XP_005265877 16 7355 XP_005263887 16 7355 NP_001232 16 7355 NP_001181926 15 9605 NP_001014437 15 9605 NP_258416 15 9605 NP_203134 15 9605 NP_203133 15 9605 NP_005705 15 9605 XP_006725192 15 9605 XP_006723736 15 9605 XP_006718403 15 9605>NP_005742 Length = 3907 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SCRLQAAVE 9 S RLQAAVE Sbjct: 1847 SSRLQAAVE 1855>NP_671714 Length = 3899 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SCRLQAAVE 9 S RLQAAVE Sbjct: 1847 SSRLQAAVE 1855>XP_006715890 Length = 3860 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SCRLQAAVE 9 S RLQAAVE Sbjct: 1800 SSRLQAAVE 1808>XP_005250160 Length = 3939 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SCRLQAAVE 9 S RLQAAVE Sbjct: 1879 SSRLQAAVE 1887>XP_005250159 Length = 3952 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SCRLQAAVE 9 S RLQAAVE Sbjct: 1879 SSRLQAAVE 1887>NP_060004 Length = 1941 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 CRLQAAVE 9 C LQAA+E Sbjct: 1544 CELQAALE 1551>NP_001093582 Length = 1941 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 CRLQAAVE 9 C LQAA+E Sbjct: 1544 CELQAALE 1551>NP_149022 Length = 513 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 CRLQAAVE 9 C LQAA+E Sbjct: 195 CSLQAALE 202>NP_001122405 Length = 1093 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 CRLQAAVE 9 CRLQA E Sbjct: 299 CRLQAGKE 306>NP_001122406 Length = 1109 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 CRLQAAVE 9 CRLQA E Sbjct: 299 CRLQAGKE 306>NP_001273683 Length = 1230 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 CRLQAAVE 9 CRLQA E Sbjct: 268 CRLQAGKE 275>NP_597734 Length = 1261 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 CRLQAAVE 9 CRLQA E Sbjct: 299 CRLQAGKE 306>NP_002463 Length = 1937 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CRLQAAVE 9 C +QAA+E Sbjct: 1541 CEIQAALE 1548>NP_004378 Length = 324 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 CRLQAAVE 9 C LQ AVE Sbjct: 114 CALQKAVE 121>NP_055510 Length = 1427 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 CRLQAAV 8 CRL AAV Sbjct: 918 CRLAAAV 924>NP_001274359 Length = 173 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SCRLQAAV 8 +C LQAAV Sbjct: 123 ACGLQAAV 130>NP_490595 Length = 730 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SCRLQAA 7 SCR QAA Sbjct: 35 SCRQQAA 41>NP_001274355 Length = 310 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SCRLQAAV 8 +C LQAAV Sbjct: 260 ACGLQAAV 267>NP_001274358 Length = 173 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SCRLQAAV 8 +C LQAAV Sbjct: 123 ACGLQAAV 130>NP_003355 Length = 310 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SCRLQAAV 8 +C LQAAV Sbjct: 260 ACGLQAAV 267>NP_001274357 Length = 173 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SCRLQAAV 8 +C LQAAV Sbjct: 123 ACGLQAAV 130>XP_005256934 Length = 1434 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 CRLQAAV 8 CRL AAV Sbjct: 918 CRLAAAV 924>XP_006721670 Length = 1471 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 CRLQAAV 8 CRL AAV Sbjct: 918 CRLAAAV 924>XP_005249895 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SCRLQAAV 8 +C LQAAV Sbjct: 196 ACGLQAAV 203>XP_005265877 Length = 286 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 CRLQAAVE 9 C LQ AVE Sbjct: 76 CALQKAVE 83>XP_005263887 Length = 709 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SCRLQAA 7 SCR QAA Sbjct: 35 SCRQQAA 41>NP_001232 Length = 663 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 SCRLQAA 7 SCR QAA Sbjct: 35 SCRQQAA 41>NP_001181926 Length = 809 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CRLQAA 7 CRLQA+ Sbjct: 87 CRLQAS 92>NP_001014437 Length = 831 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CRLQAA 7 CRLQA+ Sbjct: 87 CRLQAS 92>NP_258416 Length = 252 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SCRLQA 6 +CRLQA Sbjct: 36 ACRLQA 41>NP_203134 Length = 252 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SCRLQA 6 +CRLQA Sbjct: 36 ACRLQA 41>NP_203133 Length = 307 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SCRLQA 6 +CRLQA Sbjct: 36 ACRLQA 41>NP_005705 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 SCRLQA 6 +CRLQA Sbjct: 36 ACRLQA 41>XP_006725192 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CRLQAA 7 CRLQA+ Sbjct: 87 CRLQAS 92>XP_006723736 Length = 215 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CRLQAA 7 CRLQA+ Sbjct: 189 CRLQAS 194>XP_006718403 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CRLQAA 7 CRLQA+ Sbjct: 87 CRLQAS 92Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.121 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 461,852 Number of extensions: 420 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |