Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005148 18 1482 NP_009297 18 1482 NP_115731 16 5631 XP_006713408 16 5631 NP_783322 16 7355 NP_001265331 16 7355 NP_001019818 16 7355 NP_783324 16 7355 NP_055031 16 7355 NP_001136065 16 7355 NP_001136066 16 7355 NP_071901 16 7355 NP_783323 16 7355 XP_006719290 16 7355 XP_006719289 16 7355 NP_003631 15 9605 NP_065988 15 9605 NP_005024 15 9605 NP_001029366 15 9605 NP_002790 15 9605 NP_060686 15 9605 XP_005267986 15 9605 XP_005252342 15 9605>NP_005148 Length = 1130 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA KN Sbjct: 1054 SAVLEAGKN 1062>NP_009297 Length = 1149 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA KN Sbjct: 1073 SAVLEAGKN 1081>NP_115731 Length = 652 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LEADKN 9 LEADKN Sbjct: 289 LEADKN 294>XP_006713408 Length = 555 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LEADKN 9 LEADKN Sbjct: 192 LEADKN 197>NP_783322 Length = 476 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA +N Sbjct: 358 SAVLEAVEN 366>NP_001265331 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA +N Sbjct: 136 SAVLEAVEN 144>NP_001019818 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA +N Sbjct: 136 SAVLEAVEN 144>NP_783324 Length = 411 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA +N Sbjct: 358 SAVLEAVEN 366>NP_055031 Length = 414 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLEADKN 9 +LEAD+N Sbjct: 64 ILEADQN 70>NP_001136065 Length = 414 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLEADKN 9 +LEAD+N Sbjct: 64 ILEADQN 70>NP_001136066 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLEADKN 9 +LEAD+N Sbjct: 64 ILEADQN 70>NP_071901 Length = 460 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA +N Sbjct: 342 SAVLEAVEN 350>NP_783323 Length = 395 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA +N Sbjct: 342 SAVLEAVEN 350>XP_006719290 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA +N Sbjct: 392 SAVLEAVEN 400>XP_006719289 Length = 510 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 SAVLEADKN 9 SAVLEA +N Sbjct: 392 SAVLEAVEN 400>NP_003631 Length = 1332 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AVLEADKN 9 ++LEA KN Sbjct: 1112 SILEAQKN 1119>NP_065988 Length = 2048 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SAVLEADKN 9 SA+ + DKN Sbjct: 432 SAIQQGDKN 440>NP_005024 Length = 439 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VLEADKN 9 +LE DKN Sbjct: 401 ILEPDKN 407>NP_001029366 Length = 456 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VLEADKN 9 +LE DKN Sbjct: 418 ILEPDKN 424>NP_002790 Length = 277 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SAVLEAD 7 +AVLEAD Sbjct: 22 NAVLEAD 28>NP_060686 Length = 773 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SAVLEAD 7 SAVLE+D Sbjct: 575 SAVLESD 581>XP_005267986 Length = 2022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 SAVLEADKN 9 SA+ + DKN Sbjct: 406 SAIQQGDKN 414>XP_005252342 Length = 1218 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AVLEADKN 9 ++LEA KN Sbjct: 998 SILEAQKN 1005Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.294 0.111 0.258 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 455,015 Number of extensions: 721 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |