Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001121557 17 4312 NP_000040 17 4312 XP_005256706 17 4312 XP_006721590 17 4312 NP_005206 16 7355 XP_005258261 16 7355>NP_001121557 Length = 313 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTRSLAR 9 ATTRS+A+ Sbjct: 165 ATTRSIAK 172>NP_000040 Length = 313 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTRSLAR 9 ATTRS+A+ Sbjct: 165 ATTRSIAK 172>XP_005256706 Length = 261 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTRSLAR 9 ATTRS+A+ Sbjct: 165 ATTRSIAK 172>XP_006721590 Length = 313 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTRSLAR 9 ATTRS+A+ Sbjct: 165 ATTRSIAK 172>NP_005206 Length = 1447 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SATTRSL 7 SATTRS+ Sbjct: 811 SATTRSI 817>XP_005258261 Length = 1447 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SATTRSL 7 SATTRS+ Sbjct: 811 SATTRSI 817Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.104 0.238 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 205,139 Number of extensions: 135 Number of successful extensions: 6 Number of sequences better than 10000.0: 6 Number of HSP's gapped: 6 Number of HSP's successfully gapped: 6 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |