Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1935 XP_005262424 18 1935 NP_064580 16 5631 NP_079485 16 5631 NP_001258933 16 5631 NP_001269320 16 5631 NP_001258948 16 5631 XP_006717573 16 5631 NP_001276968 16 7355 NP_001276969 16 7355 NP_001276994 16 7355 NP_001122401 16 7355 NP_002933 16 7355 NP_001161693 16 7355 XP_006713342 16 7355 XP_005246404 16 7355 NP_001243398 15 9605 NP_036462 15 9605 NP_001243397 15 9605 NP_000202 15 9605 NP_001120963 15 9605 XP_006724064 15 9605 XP_005269721 15 9605>NP_722576 Length = 3080 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SATTQILNA 9 SATTQ LNA Sbjct: 829 SATTQRLNA 837>XP_005262424 Length = 2875 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SATTQILNA 9 SATTQ LNA Sbjct: 624 SATTQRLNA 632>NP_064580 Length = 293 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SATTQILNA 9 +A TQ+LNA Sbjct: 14 TALTQLLNA 22>NP_079485 Length = 836 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SATTQIL 7 SATTQ+L Sbjct: 744 SATTQVL 750>NP_001258933 Length = 813 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SATTQIL 7 SATTQ+L Sbjct: 721 SATTQVL 727>NP_001269320 Length = 763 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SATTQIL 7 SATTQ+L Sbjct: 671 SATTQVL 677>NP_001258948 Length = 742 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SATTQIL 7 SATTQ+L Sbjct: 650 SATTQVL 656>XP_006717573 Length = 786 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 SATTQIL 7 SATTQ+L Sbjct: 694 SATTQVL 700>NP_001276968 Length = 1382 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTQILNA 9 ATTQIL++ Sbjct: 1002 ATTQILHS 1009>NP_001276969 Length = 1443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTQILNA 9 ATTQIL++ Sbjct: 1002 ATTQILHS 1009>NP_001276994 Length = 785 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTQILNA 9 ATTQIL++ Sbjct: 405 ATTQILHS 412>NP_001122401 Length = 1394 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTQILNA 9 ATTQIL++ Sbjct: 1014 ATTQILHS 1021>NP_002933 Length = 1378 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTQILNA 9 ATTQIL++ Sbjct: 998 ATTQILHS 1005>NP_001161693 Length = 1820 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SATTQILNA 9 SAT+QI+ A Sbjct: 924 SATSQIIQA 932>XP_006713342 Length = 1205 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ATTQILNA 9 ATTQIL++ Sbjct: 1018 ATTQILHS 1025>XP_005246404 Length = 1821 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SATTQILNA 9 SAT+QI+ A Sbjct: 925 SATSQIIQA 933>NP_001243398 Length = 1781 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SATTQILN 8 S TT++LN Sbjct: 858 SETTEVLN 865>NP_036462 Length = 2073 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SATTQILN 8 S TT++LN Sbjct: 1150 SETTEVLN 1157>NP_001243397 Length = 1890 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SATTQILN 8 S TT++LN Sbjct: 967 SETTEVLN 974>NP_000202 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SATTQILN 8 SATT ++N Sbjct: 756 SATTTVMN 763>NP_001120963 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SATTQILN 8 SATT ++N Sbjct: 756 SATTTVMN 763>XP_006724064 Length = 700 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SATTQILN 8 SATT ++N Sbjct: 687 SATTTVMN 694>XP_005269721 Length = 2073 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SATTQILN 8 S TT++LN Sbjct: 1150 SETTEVLN 1157Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.302 0.106 0.243 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 270,500 Number of extensions: 208 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |