Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_062541 18 1135 NP_006268 18 1135 NP_055833 17 2528 NP_001186871 17 2528 NP_002509 17 2528 XP_006715463 17 2528 XP_006715462 17 2528 XP_006715461 17 2528 XP_006715460 17 2528 XP_006715459 17 2528 XP_006715458 17 2528 XP_006715457 17 2528 XP_006715456 17 2528 XP_005264018 17 2528 XP_005264017 17 2528 XP_005264016 17 2528 XP_005264015 17 2528 XP_005264014 17 2528 XP_005264012 17 2528 XP_005264011 17 2528 XP_005264010 17 2528 NP_060606 17 3301 NP_001229285 16 5631 NP_001229286 16 5631 NP_001137531 16 7355 NP_001137530 16 7355 NP_057606 16 7355 NP_001041674 16 7355 XP_006718920 16 7355 XP_006718919 16 7355 XP_006718918 16 7355 XP_005271639 16 7355 XP_006718917 16 7355 XP_005271637 16 7355 XP_005271638 16 7355 XP_006710019 16 7355 NP_004381 15 9605 NP_115640 15 9605 NP_001243345 15 9605 NP_001243346 15 9605 NP_055592 15 9605 NP_817123 15 9605 XP_005254238 15 9605 XP_005273417 15 9605 XP_006711022 15 9605 XP_006711021 15 9605 XP_006711020 15 9605 NP_001127925 15 9605>NP_062541 Length = 1670 Score = 18.5 bits (36), Expect = 1135 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SAQFQMYRT 9 +AQF+MY+T Sbjct: 1456 NAQFKMYKT 1464>NP_006268 Length = 1697 Score = 18.5 bits (36), Expect = 1135 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 SAQFQMYRT 9 +AQF+MY+T Sbjct: 1483 NAQFKMYKT 1491>NP_055833 Length = 2465 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2318 QFQMYR 2323>NP_001186871 Length = 2476 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2309 QFQMYR 2314>NP_002509 Length = 824 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 SAQF M++T Sbjct: 496 SAQFSMFQT 504>XP_006715463 Length = 2434 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2267 QFQMYR 2272>XP_006715462 Length = 2452 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2285 QFQMYR 2290>XP_006715461 Length = 2456 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2309 QFQMYR 2314>XP_006715460 Length = 2465 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2318 QFQMYR 2323>XP_006715459 Length = 2475 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2308 QFQMYR 2313>XP_006715458 Length = 2476 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2309 QFQMYR 2314>XP_006715457 Length = 2485 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2318 QFQMYR 2323>XP_006715456 Length = 2485 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QFQMYR 8 QFQMYR Sbjct: 2318 QFQMYR 2323>XP_005264018 Length = 700 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 SAQF M++T Sbjct: 372 SAQFSMFQT 380>XP_005264017 Length = 786 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 SAQF M++T Sbjct: 458 SAQFSMFQT 466>XP_005264016 Length = 835 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 SAQF M++T Sbjct: 561 SAQFSMFQT 569>XP_005264015 Length = 838 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 SAQF M++T Sbjct: 510 SAQFSMFQT 518>XP_005264014 Length = 851 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 SAQF M++T Sbjct: 523 SAQFSMFQT 531>XP_005264012 Length = 854 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 SAQF M++T Sbjct: 526 SAQFSMFQT 534>XP_005264011 Length = 888 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 SAQF M++T Sbjct: 561 SAQFSMFQT 569>XP_005264010 Length = 889 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 SAQF M++T Sbjct: 561 SAQFSMFQT 569>NP_060606 Length = 3477 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AQFQMYRT 9 A F+MYRT Sbjct: 2489 ATFRMYRT 2496>NP_001229285 Length = 209 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SAQFQMYRT 9 SAQ QMY T Sbjct: 20 SAQQQMYDT 28>NP_001229286 Length = 192 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 SAQFQMYRT 9 SAQ QMY T Sbjct: 20 SAQQQMYDT 28>NP_001137531 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 250 SAEFQWYK 257>NP_001137530 Length = 355 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 250 SAEFQWYK 257>NP_057606 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 250 SAEFQWYK 257>NP_001041674 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 250 SAEFQWYK 257>XP_006718920 Length = 303 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 209 SAEFQWYK 216>XP_006718919 Length = 326 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 209 SAEFQWYK 216>XP_006718918 Length = 346 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 241 SAEFQWYK 248>XP_005271639 Length = 355 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 250 SAEFQWYK 257>XP_006718917 Length = 358 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 241 SAEFQWYK 248>XP_005271637 Length = 367 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 250 SAEFQWYK 257>XP_005271638 Length = 367 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 250 SAEFQWYK 257>XP_006710019 Length = 565 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 SAQFQMYR 8 SA+FQ Y+ Sbjct: 448 SAEFQWYK 455>NP_004381 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FQMYRT 9 F MYRT Sbjct: 259 FMMYRT 264>NP_115640 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 AQFQMYRT 9 A FQ YR+ Sbjct: 586 ASFQQYRS 593>NP_001243345 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 AQFQMYRT 9 A FQ YR+ Sbjct: 574 ASFQQYRS 581>NP_001243346 Length = 563 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 AQFQMYRT 9 A FQ YR+ Sbjct: 516 ASFQQYRS 523>NP_055592 Length = 1524 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 AQFQMYR 8 AQF+ YR Sbjct: 385 AQFRFYR 391>NP_817123 Length = 1040 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 ++QFQM+ T Sbjct: 362 ASQFQMHPT 370>XP_005254238 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FQMYRT 9 F MYRT Sbjct: 221 FMMYRT 226>XP_005273417 Length = 1487 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 AQFQMYR 8 AQF+ YR Sbjct: 385 AQFRFYR 391>XP_006711022 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 AQFQMYRT 9 A FQ YR+ Sbjct: 530 ASFQQYRS 537>XP_006711021 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 AQFQMYRT 9 A FQ YR+ Sbjct: 530 ASFQQYRS 537>XP_006711020 Length = 596 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 AQFQMYRT 9 A FQ YR+ Sbjct: 549 ASFQQYRS 556>NP_001127925 Length = 1059 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 SAQFQMYRT 9 ++QFQM+ T Sbjct: 362 ASQFQMHPT 370Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.122 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 390,963 Number of extensions: 574 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |