Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 17 3301 NP_004561 17 3301 NP_001275703 17 3301 XP_005253450 17 3301 XP_006719151 17 3301 NP_857597 16 5631 NP_849189 15 9605 NP_006552 15 9605 NP_001077060 15 9605 NP_001020248 15 9605 NP_001020247 15 9605 NP_006551 15 9605 NP_001166110 15 9605 NP_941989 15 9605 NP_004437 15 9605 NP_001166111 15 9605 NP_001020767 15 9605 XP_006718194 15 9605 XP_006718193 15 9605 XP_006718192 15 9605 XP_006718191 15 9605 XP_006718190 15 9605 XP_005252813 15 9605 XP_005252812 15 9605 XP_006718189 15 9605 XP_006718188 15 9605 XP_006718187 15 9605 XP_005252811 15 9605 XP_006718186 15 9605 XP_006718185 15 9605 XP_005269574 15 9605 XP_006717681 15 9605 XP_005252414 15 9605 XP_005252415 15 9605 XP_006717438 15 9605 XP_006717437 15 9605 XP_006717436 15 9605 XP_006717435 15 9605 XP_006717434 15 9605 XP_005252411 15 9605 XP_006717433 15 9605 XP_006717432 15 9605 XP_006717431 15 9605 XP_006717430 15 9605 XP_005252408 15 9605 XP_005252406 15 9605 XP_005252405 15 9605 XP_006717429 15 9605 XP_006717428 15 9605>NP_001275701 Length = 1486 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SAKVLIEKV 9 SAK LIEKV Sbjct: 474 SAKGLIEKV 482>NP_004561 Length = 1445 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SAKVLIEKV 9 SAK LIEKV Sbjct: 474 SAKGLIEKV 482>NP_001275703 Length = 1264 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SAKVLIEKV 9 SAK LIEKV Sbjct: 252 SAKGLIEKV 260>XP_005253450 Length = 1486 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SAKVLIEKV 9 SAK LIEKV Sbjct: 474 SAKGLIEKV 482>XP_006719151 Length = 1486 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 SAKVLIEKV 9 SAK LIEKV Sbjct: 474 SAKGLIEKV 482>NP_857597 Length = 1349 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 SAKVLIEKV 9 +AK+L+E+V Sbjct: 924 TAKILLERV 932>NP_849189 Length = 322 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AKVLIEK 8 AKV++EK Sbjct: 46 AKVMVEK 52>NP_006552 Length = 521 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 464 SAKVFIDK 471>NP_001077060 Length = 488 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 431 SAKVFIDK 438>NP_001020248 Length = 508 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 451 SAKVFIDK 458>NP_001020247 Length = 490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 433 SAKVFIDK 440>NP_006551 Length = 482 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 425 SAKVFIDK 432>NP_001166110 Length = 512 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 455 SAKVFIDK 462>NP_941989 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 426 SAKVFIDK 433>NP_004437 Length = 1512 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AKVLIEKV 9 AKVL +KV Sbjct: 901 AKVLFDKV 908>NP_001166111 Length = 485 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 428 SAKVFIDK 435>NP_001020767 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 429 SAKVFIDK 436>XP_006718194 Length = 487 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 430 SAKVFIDK 437>XP_006718193 Length = 487 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 430 SAKVFIDK 437>XP_006718192 Length = 487 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 430 SAKVFIDK 437>XP_006718191 Length = 487 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 430 SAKVFIDK 437>XP_006718190 Length = 513 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 456 SAKVFIDK 463>XP_005252813 Length = 514 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 457 SAKVFIDK 464>XP_005252812 Length = 519 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 462 SAKVFIDK 469>XP_006718189 Length = 519 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 462 SAKVFIDK 469>XP_006718188 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 465 SAKVFIDK 472>XP_006718187 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 465 SAKVFIDK 472>XP_005252811 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 466 SAKVFIDK 473>XP_006718186 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 466 SAKVFIDK 473>XP_006718185 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 466 SAKVFIDK 473>XP_005269574 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AKVLIEK 8 AKV++EK Sbjct: 58 AKVMVEK 64>XP_006717681 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AKVLIEK 8 AKV++EK Sbjct: 64 AKVMVEK 70>XP_005252414 Length = 280 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 223 SAKVFIDK 230>XP_005252415 Length = 280 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 223 SAKVFIDK 230>XP_006717438 Length = 290 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 233 SAKVFIDK 240>XP_006717437 Length = 290 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 233 SAKVFIDK 240>XP_006717436 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 346 SAKVFIDK 353>XP_006717435 Length = 407 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 350 SAKVFIDK 357>XP_006717434 Length = 407 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 350 SAKVFIDK 357>XP_005252411 Length = 514 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 457 SAKVFIDK 464>XP_006717433 Length = 518 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 461 SAKVFIDK 468>XP_006717432 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 468 SAKVFIDK 475>XP_006717431 Length = 530 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 473 SAKVFIDK 480>XP_006717430 Length = 537 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 480 SAKVFIDK 487>XP_005252408 Length = 539 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 482 SAKVFIDK 489>XP_005252406 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 486 SAKVFIDK 493>XP_005252405 Length = 545 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 488 SAKVFIDK 495>XP_006717429 Length = 549 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 492 SAKVFIDK 499>XP_006717428 Length = 549 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 SAKVLIEK 8 SAKV I+K Sbjct: 492 SAKVFIDK 499Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.127 0.278 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 346,104 Number of extensions: 439 Number of successful extensions: 49 Number of sequences better than 10000.0: 49 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 49 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |