Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 20 509 NP_001263689 20 509 NP_001119584 20 509 NP_001119586 20 509 NP_001263625 20 509 NP_001119590 20 509 NP_001263690 20 509 NP_001119585 20 509 NP_001263624 20 509 NP_001119588 20 509 NP_001119587 20 509 NP_001119589 20 509 NP_665806 18 1935 XP_006723074 18 1935 NP_002935 16 7355 XP_006715611 16 7355>NP_000537 Length = 393 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 156 RVRAMAIYK 164>NP_001263689 Length = 354 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 117 RVRAMAIYK 125>NP_001119584 Length = 393 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 156 RVRAMAIYK 164>NP_001119586 Length = 341 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 156 RVRAMAIYK 164>NP_001263625 Length = 302 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 117 RVRAMAIYK 125>NP_001119590 Length = 354 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 117 RVRAMAIYK 125>NP_001263690 Length = 354 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 117 RVRAMAIYK 125>NP_001119585 Length = 346 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 156 RVRAMAIYK 164>NP_001263624 Length = 307 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 117 RVRAMAIYK 125>NP_001119588 Length = 209 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 24 RVRAMAIYK 32>NP_001119587 Length = 261 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 24 RVRAMAIYK 32>NP_001119589 Length = 214 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVRVMAIYK 9 RVR MAIYK Sbjct: 24 RVRAMAIYK 32>NP_665806 Length = 489 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VRVMAIYK 9 VRV+A+YK Sbjct: 389 VRVLAVYK 396>XP_006723074 Length = 489 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VRVMAIYK 9 VRV+A+YK Sbjct: 389 VRVLAVYK 396>NP_002935 Length = 2347 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRVMAIYK 9 VRV+ +YK Sbjct: 1727 VRVVVVYK 1734>XP_006715611 Length = 2342 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRVMAIYK 9 VRV+ +YK Sbjct: 1722 VRVVVVYK 1729Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.347 0.147 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 262,974 Number of extensions: 279 Number of successful extensions: 16 Number of sequences better than 10000.0: 16 Number of HSP's gapped: 16 Number of HSP's successfully gapped: 16 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |