Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 665 NP_001263689 19 665 NP_001119584 19 665 NP_001119586 19 665 NP_001263625 19 665 NP_001119590 19 665 NP_001263690 19 665 NP_001119585 19 665 NP_001263624 19 665 NP_001119588 19 665 NP_001119587 19 665 NP_001119589 19 665 NP_001164663 15 9605 NP_859051 15 9605 NP_859050 15 9605 NP_002707 15 9605 NP_001171033 15 9605 XP_006718935 15 9605 XP_006718934 15 9605 XP_006718933 15 9605 XP_006718932 15 9605 XP_006718931 15 9605 XP_006718930 15 9605 NP_001171034 15 9605>NP_000537 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 156 RVRAMAIYK 164>NP_001263689 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 117 RVRAMAIYK 125>NP_001119584 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 156 RVRAMAIYK 164>NP_001119586 Length = 341 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 156 RVRAMAIYK 164>NP_001263625 Length = 302 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 117 RVRAMAIYK 125>NP_001119590 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 117 RVRAMAIYK 125>NP_001263690 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 117 RVRAMAIYK 125>NP_001119585 Length = 346 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 156 RVRAMAIYK 164>NP_001263624 Length = 307 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 117 RVRAMAIYK 125>NP_001119588 Length = 209 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 24 RVRAMAIYK 32>NP_001119587 Length = 261 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 24 RVRAMAIYK 32>NP_001119589 Length = 214 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RVRAMAIHK 9 RVRAMAI+K Sbjct: 24 RVRAMAIYK 32>NP_001164663 Length = 590 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AMAIHK 9 AMA+HK Sbjct: 486 AMALHK 491>NP_859051 Length = 603 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 246 VRAAAAHK 253>NP_859050 Length = 667 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 310 VRAAAAHK 317>NP_002707 Length = 601 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 310 VRAAAAHK 317>NP_001171033 Length = 556 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 310 VRAAAAHK 317>XP_006718935 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 397 VRAAAAHK 404>XP_006718934 Length = 643 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 397 VRAAAAHK 404>XP_006718933 Length = 688 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 397 VRAAAAHK 404>XP_006718932 Length = 754 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 397 VRAAAAHK 404>XP_006718931 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 397 VRAAAAHK 404>XP_006718930 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 397 VRAAAAHK 404>NP_001171034 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VRAMAIHK 9 VRA A HK Sbjct: 183 VRAAAAHK 190Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.344 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 369,151 Number of extensions: 400 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |