Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 17 2528 NP_001035957 17 2528 XP_006721991 17 2528 XP_006721990 17 2528 XP_006721989 17 2528 XP_005258041 17 2528 XP_006721988 17 2528 XP_006721987 17 2528 XP_006721986 17 2528 XP_005258040 17 2528 XP_006721985 17 2528 NP_001181915 17 4312 XP_006710703 17 4312 NP_001129334 16 5631 NP_612424 16 5631 NP_001229379 16 5631 NP_001271225 16 5631 XP_006724185 16 5631 NP_001231509 16 7355 NP_003487 16 7355>NP_000258 Length = 2818 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 758 RVMALLRRI 766>NP_001035957 Length = 2839 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 758 RVMALLRRI 766>XP_006721991 Length = 1632 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 768 RVMALLRRI 776>XP_006721990 Length = 2823 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 768 RVMALLRRI 776>XP_006721989 Length = 2823 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 768 RVMALLRRI 776>XP_005258041 Length = 2836 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 758 RVMALLRRI 766>XP_006721988 Length = 2846 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 768 RVMALLRRI 776>XP_006721987 Length = 2849 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 768 RVMALLRRI 776>XP_006721986 Length = 2854 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 755 RVMALLRRI 763>XP_005258040 Length = 2857 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 758 RVMALLRRI 766>XP_006721985 Length = 2867 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RVMALLR I Sbjct: 768 RVMALLRRI 776>NP_001181915 Length = 517 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 RVMALLR 7 RVMALLR Sbjct: 310 RVMALLR 316>XP_006710703 Length = 552 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 RVMALLR 7 RVMALLR Sbjct: 310 RVMALLR 316>NP_001129334 Length = 489 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 R+ ALLRLI Sbjct: 439 RLRALLRLI 447>NP_612424 Length = 531 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 R+ ALLRLI Sbjct: 481 RLRALLRLI 489>NP_001229379 Length = 477 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 R+ ALLRLI Sbjct: 427 RLRALLRLI 435>NP_001271225 Length = 327 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 R+ ALLRLI Sbjct: 277 RLRALLRLI 285>XP_006724185 Length = 489 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 R+ ALLRLI Sbjct: 439 RLRALLRLI 447>NP_001231509 Length = 3859 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RV+ LLRL+ Sbjct: 3544 RVLQLLRLL 3552>NP_003487 Length = 3830 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RVMALLRLI 9 RV+ LLRL+ Sbjct: 3515 RVLQLLRLL 3523Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.361 0.165 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 250,018 Number of extensions: 398 Number of successful extensions: 20 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 20 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |