Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1935 NP_001011705 16 5631 NP_008946 16 5631 NP_689777 16 5631 NP_060360 16 5631 XP_006719824 16 5631 XP_006719823 16 5631 XP_006716573 16 5631 XP_005250858 16 5631 XP_005250857 16 5631 NP_001139138 16 7355 NP_001139139 16 7355 NP_036333 16 7355 NP_065974 16 7355 NP_001272478 16 7355 XP_006716107 16 7355 XP_006712720 16 7355 XP_006712719 16 7355 XP_005246770 16 7355 XP_005246768 16 7355 XP_005246769 16 7355 NP_940927 15 9605 NP_000443 15 9605 NP_665879 15 9605 XP_006720560 15 9605 XP_005254961 15 9605 XP_005254960 15 9605 XP_005254959 15 9605 NP_057200 15 9605>NP_004295 Length = 1620 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVLKVGSVR 9 RVLK GSVR Sbjct: 125 RVLKGGSVR 133>NP_001011705 Length = 333 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RVLKVGSV 8 R+LKVG+V Sbjct: 38 RLLKVGAV 45>NP_008946 Length = 334 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RVLKVGSV 8 R+LKVG+V Sbjct: 38 RLLKVGAV 45>NP_689777 Length = 3997 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VLKVGSV 8 VLK+GSV Sbjct: 1555 VLKIGSV 1561>NP_060360 Length = 4022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VLKVGSV 8 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_006719824 Length = 217 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RVLKVGSV 8 R+LKVG+V Sbjct: 38 RLLKVGAV 45>XP_006719823 Length = 218 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RVLKVGSV 8 R+LKVG+V Sbjct: 38 RLLKVGAV 45>XP_006716573 Length = 1776 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VLKVGSV 8 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_005250858 Length = 4022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VLKVGSV 8 VLK+GSV Sbjct: 1580 VLKIGSV 1586>XP_005250857 Length = 4022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VLKVGSV 8 VLK+GSV Sbjct: 1580 VLKIGSV 1586>NP_001139138 Length = 1192 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 +LK GS+R Sbjct: 236 ILKCGSIR 243>NP_001139139 Length = 1179 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 +LK GS+R Sbjct: 247 ILKCGSIR 254>NP_036333 Length = 1203 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 +LK GS+R Sbjct: 247 ILKCGSIR 254>NP_065974 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>NP_001272478 Length = 2352 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 VLKV SVR Sbjct: 1790 VLKVDSVR 1797>XP_006716107 Length = 579 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 V K+GSVR Sbjct: 564 VRKIGSVR 571>XP_006712720 Length = 1991 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>XP_006712719 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>XP_005246770 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>XP_005246768 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>XP_005246769 Length = 2354 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 VLKV SVR Sbjct: 1792 VLKVDSVR 1799>NP_940927 Length = 1343 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RVLKVGS 7 RVLK GS Sbjct: 258 RVLKTGS 264>NP_000443 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VLKVGSV 8 +LK+GS+ Sbjct: 193 ILKIGSI 199>NP_665879 Length = 349 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 VLKV SVR Sbjct: 292 VLKVTSVR 299>XP_006720560 Length = 1313 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RVLKVGS 7 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005254961 Length = 1342 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RVLKVGS 7 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005254960 Length = 1342 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RVLKVGS 7 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005254959 Length = 1343 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RVLKVGS 7 RVLK GS Sbjct: 258 RVLKTGS 264>NP_057200 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VLKVGSVR 9 VLKV SVR Sbjct: 292 VLKVTSVR 299Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.144 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 364,971 Number of extensions: 386 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |