Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 665 NP_001263689 19 665 NP_001119584 19 665 NP_001119586 19 665 NP_001263625 19 665 NP_001119590 19 665 NP_001263690 19 665 NP_001119585 19 665 NP_001263624 19 665 NP_001119588 19 665 NP_001119587 19 665 NP_001119589 19 665 NP_064581 17 3301 NP_001193976 16 7355 NP_001484 16 7355 NP_647537 16 7355 NP_647538 16 7355 NP_001485 16 7355 NP_001108628 16 7355 NP_848663 16 7355 XP_005260918 16 7355 XP_005260917 16 7355 NP_612455 16 7355 NP_207837 15 9605 NP_001186681 15 9605 NP_001129524 15 9605 NP_689572 15 9605 NP_001186682 15 9605 NP_001012773 15 9605 NP_848611 15 9605 NP_689600 15 9605 XP_005262186 15 9605 XP_006723073 15 9605 XP_006723072 15 9605 XP_005258564 15 9605 XP_005258563 15 9605 XP_005258562 15 9605 XP_005246358 15 9605 NP_620481 15 9605 NP_001005324 15 9605>NP_000537 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 156 RVRAMAIYK 164>NP_001263689 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 117 RVRAMAIYK 125>NP_001119584 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 156 RVRAMAIYK 164>NP_001119586 Length = 341 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 156 RVRAMAIYK 164>NP_001263625 Length = 302 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 117 RVRAMAIYK 125>NP_001119590 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 117 RVRAMAIYK 125>NP_001263690 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 117 RVRAMAIYK 125>NP_001119585 Length = 346 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 156 RVRAMAIYK 164>NP_001263624 Length = 307 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 117 RVRAMAIYK 125>NP_001119588 Length = 209 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 24 RVRAMAIYK 32>NP_001119587 Length = 261 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 24 RVRAMAIYK 32>NP_001119589 Length = 214 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 RV AMAIYK Sbjct: 24 RVRAMAIYK 32>NP_064581 Length = 855 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 HAMAIYK 9 HAMA+Y+ Sbjct: 611 HAMAVYE 617>NP_001193976 Length = 1156 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 HAMAIYK 9 H++A+YK Sbjct: 279 HSLALYK 285>NP_001484 Length = 447 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 HAMAIYK 9 HA+A+Y+ Sbjct: 187 HALALYR 193>NP_647537 Length = 1429 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 HAMAIYK 9 H++A+YK Sbjct: 395 HSLALYK 401>NP_647538 Length = 1272 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 HAMAIYK 9 H++A+YK Sbjct: 395 HSLALYK 401>NP_001485 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 HAMAIYK 9 HA+A+Y+ Sbjct: 187 HALALYR 193>NP_001108628 Length = 400 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 HAMAIYK 9 HA+A+Y+ Sbjct: 142 HALALYR 148>NP_848663 Length = 441 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RVHAMAIYK 9 ++HA+ +YK Sbjct: 126 KLHALYLYK 134>XP_005260918 Length = 1111 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 HAMAIYK 9 H++A+YK Sbjct: 395 HSLALYK 401>XP_005260917 Length = 1289 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 HAMAIYK 9 H++A+YK Sbjct: 395 HSLALYK 401>NP_612455 Length = 234 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VHAMAIY 8 +HAMA Y Sbjct: 135 LHAMAFY 141>NP_207837 Length = 1308 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RVHAMAIYK 9 R+H+ A YK Sbjct: 771 RLHSEAAYK 779>NP_001186681 Length = 803 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VHAMAIYK 9 VHA+ +Y+ Sbjct: 276 VHALLLYR 283>NP_001129524 Length = 792 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VHAMAIYK 9 VHA+ +Y+ Sbjct: 265 VHALLLYR 272>NP_689572 Length = 803 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VHAMAIYK 9 VHA+ +Y+ Sbjct: 276 VHALLLYR 283>NP_001186682 Length = 803 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VHAMAIYK 9 VHA+ +Y+ Sbjct: 276 VHALLLYR 283>NP_001012773 Length = 307 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 RVHAMAI 7 ++HAMA+ Sbjct: 56 QIHAMAV 62>NP_848611 Length = 746 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RVHAMAI 7 RVH MA+ Sbjct: 447 RVHGMAL 453>NP_689600 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RVHAMAIYK 9 R+H+ I+K Sbjct: 180 RIHSKGIFK 188>XP_005262186 Length = 307 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 RVHAMAI 7 ++HAMA+ Sbjct: 56 QIHAMAV 62>XP_006723073 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VHAMAIYK 9 VHA+ +Y+ Sbjct: 276 VHALLLYR 283>XP_006723072 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VHAMAIYK 9 VHA+ +Y+ Sbjct: 114 VHALLLYR 121>XP_005258564 Length = 752 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VHAMAIYK 9 VHA+ +Y+ Sbjct: 276 VHALLLYR 283>XP_005258563 Length = 803 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VHAMAIYK 9 VHA+ +Y+ Sbjct: 276 VHALLLYR 283>XP_005258562 Length = 803 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VHAMAIYK 9 VHA+ +Y+ Sbjct: 276 VHALLLYR 283>XP_005246358 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RVHAMAIYK 9 R+H+ I+K Sbjct: 180 RIHSKGIFK 188>NP_620481 Length = 1235 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RVHAMAIYK 9 R+H+ A YK Sbjct: 698 RLHSEAAYK 706>NP_001005324 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 RVHAMAIY 8 RVH A+Y Sbjct: 194 RVHKTALY 201Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 470,440 Number of extensions: 483 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |