Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004976 20 390 NP_203524 20 390 XP_006719132 20 390 NP_002515 20 509 NP_000834 18 1935 NP_004597 17 4312 NP_001273003 17 4312 NP_620278 17 4312 XP_006724745 17 4312 XP_006724744 17 4312 XP_005262354 17 4312 XP_006724743 17 4312 XP_005262353 17 4312 XP_005262352 17 4312 NP_056234 16 5631 XP_005274542 16 5631 NP_789765 16 7355 NP_001123914 16 7355 NP_005334 16 7355 XP_006725199 16 7355 XP_006718280 16 7355 NP_055938 15 9605 NP_001028895 15 9605 XP_005251336 15 9605 XP_006716527 15 9605 XP_005264780 15 9605 XP_006713127 15 9605 XP_006713126 15 9605 XP_005264779 15 9605 XP_005264778 15 9605 XP_005264777 15 9605>NP_004976 Length = 188 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RTVDTKQAR 9 RTVDTKQA+ Sbjct: 123 RTVDTKQAQ 131>NP_203524 Length = 189 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RTVDTKQAR 9 RTVDTKQA+ Sbjct: 123 RTVDTKQAQ 131>XP_006719132 Length = 189 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RTVDTKQAR 9 RTVDTKQA+ Sbjct: 123 RTVDTKQAQ 131>NP_002515 Length = 189 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RTVDTKQA 8 RTVDTKQA Sbjct: 123 RTVDTKQA 130>NP_000834 Length = 877 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RTVD +QAR Sbjct: 731 RTVDPEQAR 739>NP_004597 Length = 1893 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RT+ T+QAR Sbjct: 1051 RTMSTEQAR 1059>NP_001273003 Length = 1895 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RT+ T+QAR Sbjct: 1051 RTMSTEQAR 1059>NP_620278 Length = 1872 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RT+ T+QAR Sbjct: 1030 RTMSTEQAR 1038>XP_006724745 Length = 1800 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RT+ T+QAR Sbjct: 924 RTMSTEQAR 932>XP_006724744 Length = 1851 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RT+ T+QAR Sbjct: 1051 RTMSTEQAR 1059>XP_005262354 Length = 1906 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RT+ T+QAR Sbjct: 1030 RTMSTEQAR 1038>XP_006724743 Length = 1924 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RT+ T+QAR Sbjct: 1051 RTMSTEQAR 1059>XP_005262353 Length = 1926 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RT+ T+QAR Sbjct: 1051 RTMSTEQAR 1059>XP_005262352 Length = 1927 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTVDTKQAR 9 RT+ T+QAR Sbjct: 1051 RTMSTEQAR 1059>NP_056234 Length = 2828 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TVDTKQAR 9 T DT+QAR Sbjct: 465 TKDTRQAR 472>XP_005274542 Length = 2853 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TVDTKQAR 9 T DT+QAR Sbjct: 490 TKDTRQAR 497>NP_789765 Length = 170 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTVDTKQAR 9 RTV+++QA+ Sbjct: 123 RTVESRQAQ 131>NP_001123914 Length = 189 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTVDTKQAR 9 RTV+++QA+ Sbjct: 123 RTVESRQAQ 131>NP_005334 Length = 189 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTVDTKQAR 9 RTV+++QA+ Sbjct: 123 RTVESRQAQ 131>XP_006725199 Length = 170 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTVDTKQAR 9 RTV+++QA+ Sbjct: 123 RTVESRQAQ 131>XP_006718280 Length = 170 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTVDTKQAR 9 RTV+++QA+ Sbjct: 123 RTVESRQAQ 131>NP_055938 Length = 1034 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VDTKQAR 9 VDT+Q+R Sbjct: 634 VDTRQSR 640>NP_001028895 Length = 412 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RTVDTKQA 8 +T DTK+A Sbjct: 33 KTADTKKA 40>XP_005251336 Length = 412 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RTVDTKQA 8 +T DTK+A Sbjct: 33 KTADTKKA 40>XP_006716527 Length = 378 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RTVDTKQA 8 +T DTK+A Sbjct: 33 KTADTKKA 40>XP_005264780 Length = 686 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VDTKQAR 9 VDT+Q+R Sbjct: 286 VDTRQSR 292>XP_006713127 Length = 745 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VDTKQAR 9 VDT+Q+R Sbjct: 345 VDTRQSR 351>XP_006713126 Length = 980 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VDTKQAR 9 VDT+Q+R Sbjct: 580 VDTRQSR 586>XP_005264779 Length = 989 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VDTKQAR 9 VDT+Q+R Sbjct: 589 VDTRQSR 595>XP_005264778 Length = 1001 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VDTKQAR 9 VDT+Q+R Sbjct: 601 VDTRQSR 607>XP_005264777 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VDTKQAR 9 VDT+Q+R Sbjct: 603 VDTRQSR 609Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.118 0.300 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 376,954 Number of extensions: 472 Number of successful extensions: 31 Number of sequences better than 10000.0: 31 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 31 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |