Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 21 229 NP_671714 21 229 XP_006715890 21 229 XP_005250160 21 229 XP_005250159 21 229 NP_001278327 17 2528 NP_001005751 17 2528 NP_001162578 17 2528 XP_005269867 17 2528 XP_006717895 17 2528 XP_005269865 17 2528 XP_006717894 17 2528 XP_005269864 17 2528 XP_005269863 17 2528 NP_001162577 17 2528 NP_056077 17 2528 NP_659415 17 4312 XP_005263951 17 4312 XP_006712408 17 4312 XP_006712407 17 4312 NP_000341 16 5631 NP_078958 16 5631 NP_001161694 16 5631 NP_005722 16 5631 NP_690601 16 5631 XP_006723448 16 5631 XP_006712236 16 5631 NP_001315 16 5631 NP_001028693 16 5631 NP_001028694 16 5631 NP_001001674 16 5631 NP_001264090 16 7355 NP_004736 16 7355 XP_005266095 16 7355 NP_940980 15 9605 NP_008835 15 9605 NP_001075109 15 9605 NP_689520 15 9605 NP_997191 15 9605 NP_001152956 15 9605 NP_006159 15 9605 NP_001257609 15 9605 NP_001257608 15 9605 NP_612366 15 9605 XP_005268686 15 9605 XP_006714293 15 9605 XP_006711682 15 9605>NP_005742 Length = 3907 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RTQLLFSHK 9 RTQLLFSH+ Sbjct: 626 RTQLLFSHE 634>NP_671714 Length = 3899 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RTQLLFSHK 9 RTQLLFSH+ Sbjct: 626 RTQLLFSHE 634>XP_006715890 Length = 3860 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RTQLLFSHK 9 RTQLLFSH+ Sbjct: 626 RTQLLFSHE 634>XP_005250160 Length = 3939 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RTQLLFSHK 9 RTQLLFSH+ Sbjct: 626 RTQLLFSHE 634>XP_005250159 Length = 3952 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RTQLLFSHK 9 RTQLLFSH+ Sbjct: 626 RTQLLFSHE 634>NP_001278327 Length = 1320 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 844 ELLFSHK 850>NP_001005751 Length = 1341 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 844 ELLFSHK 850>NP_001162578 Length = 1245 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 769 ELLFSHK 775>XP_005269867 Length = 742 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 245 ELLFSHK 251>XP_006717895 Length = 1297 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 821 ELLFSHK 827>XP_005269865 Length = 1331 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 896 ELLFSHK 902>XP_006717894 Length = 1342 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 845 ELLFSHK 851>XP_005269864 Length = 1364 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 867 ELLFSHK 873>XP_005269863 Length = 1369 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 872 ELLFSHK 878>NP_001162577 Length = 1279 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 844 ELLFSHK 850>NP_056077 Length = 1320 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 +LLFSHK Sbjct: 844 ELLFSHK 850>NP_659415 Length = 665 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RTQLLFSHK 9 R QLLF H+ Sbjct: 215 REQLLFRHE 223>XP_005263951 Length = 577 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RTQLLFSHK 9 R QLLF H+ Sbjct: 215 REQLLFRHE 223>XP_006712408 Length = 583 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RTQLLFSHK 9 R QLLF H+ Sbjct: 221 REQLLFRHE 229>XP_006712407 Length = 671 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RTQLLFSHK 9 R QLLF H+ Sbjct: 221 REQLLFRHE 229>NP_000341 Length = 2273 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 QLLFSHK 9 QLL SHK Sbjct: 2220 QLLLSHK 2226>NP_078958 Length = 648 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TQLLFSHK 9 TQ+LFS K Sbjct: 58 TQILFSKK 65>NP_001161694 Length = 615 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TQLLFSHK 9 TQ+LFS K Sbjct: 25 TQILFSKK 32>NP_005722 Length = 300 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 Q+LFSH+ Sbjct: 197 QVLFSHR 203>NP_690601 Length = 300 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 Q+LFSH+ Sbjct: 197 QVLFSHR 203>XP_006723448 Length = 565 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TQLLFSHK 9 TQ+LFS K Sbjct: 58 TQILFSKK 65>XP_006712236 Length = 245 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QLLFSHK 9 Q+LFSH+ Sbjct: 142 QVLFSHR 148>NP_001315 Length = 431 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RTQLLFSH 8 RTQ +F+H Sbjct: 356 RTQAVFNH 363>NP_001028693 Length = 431 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RTQLLFSH 8 RTQ +F+H Sbjct: 356 RTQAVFNH 363>NP_001028694 Length = 431 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RTQLLFSH 8 RTQ +F+H Sbjct: 356 RTQAVFNH 363>NP_001001674 Length = 312 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TQLLFSH 8 TQ+ FSH Sbjct: 99 TQIFFSH 105>NP_001264090 Length = 961 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTQLLFSHK 9 RTQ LFS++ Sbjct: 728 RTQGLFSYR 736>NP_004736 Length = 975 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTQLLFSHK 9 RTQ LFS++ Sbjct: 742 RTQGLFSYR 750>XP_005266095 Length = 1078 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTQLLFSHK 9 RTQ LFS++ Sbjct: 845 RTQGLFSYR 853>NP_940980 Length = 2527 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 QLLFSH 8 +LLFSH Sbjct: 1224 ELLFSH 1229>NP_008835 Length = 4128 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LLFSHK 9 LLF+HK Sbjct: 2678 LLFAHK 2683>NP_001075109 Length = 4097 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LLFSHK 9 LLF+HK Sbjct: 2678 LLFAHK 2683>NP_689520 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RTQLLFS 7 RTQ+L+S Sbjct: 83 RTQILYS 89>NP_997191 Length = 1888 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RTQLLFSHK 9 +T L+F HK Sbjct: 328 QTNLVFVHK 336>NP_001152956 Length = 1736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RTQLLFSHK 9 +T L+F HK Sbjct: 328 QTNLVFVHK 336>NP_006159 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TQLLFSHK 9 TQLL HK Sbjct: 340 TQLLKKHK 347>NP_001257609 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RTQLLFSHK 9 R LLF HK Sbjct: 248 RQYLLFFHK 256>NP_001257608 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RTQLLFSHK 9 R LLF HK Sbjct: 276 RQYLLFFHK 284>NP_612366 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RTQLLFSHK 9 R LLF HK Sbjct: 297 RQYLLFFHK 305>XP_005268686 Length = 2521 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 QLLFSH 8 +LLFSH Sbjct: 1224 ELLFSH 1229>XP_006714293 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TQLLFSHK 9 TQLL HK Sbjct: 340 TQLLKKHK 347>XP_006711682 Length = 1739 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RTQLLFSHK 9 +T L+F HK Sbjct: 179 QTNLVFVHK 187Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 496,276 Number of extensions: 935 Number of successful extensions: 47 Number of sequences better than 10000.0: 47 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 47 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |