Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 20 509 NP_000170 20 509 NP_001268422 20 509 NP_001268423 20 509 XP_005264328 20 509 NP_009068 17 4312 NP_076971 17 4312 XP_005272657 17 4312 XP_005271245 17 4312 XP_005271244 17 4312 XP_005271243 17 4312 XP_005271241 17 4312 XP_005259280 16 5631 XP_005259279 16 5631 NP_037494 16 5631 NP_001274103 16 7355 NP_000343 16 7355 NP_055959 16 7355 XP_005255915 16 7355 XP_006718349 16 7355 NP_002431 15 9605 XP_005257785 15 9605 NP_115510 15 9605>NP_001268421 Length = 1230 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 R MSGESTF Sbjct: 1052 RIMSGESTF 1060>NP_000170 Length = 1360 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 R MSGESTF Sbjct: 1182 RIMSGESTF 1190>NP_001268422 Length = 1058 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 R MSGESTF Sbjct: 880 RIMSGESTF 888>NP_001268423 Length = 1058 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 R MSGESTF Sbjct: 880 RIMSGESTF 888>XP_005264328 Length = 1261 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 R MSGESTF Sbjct: 1083 RIMSGESTF 1091>NP_009068 Length = 661 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 R +SG+STF Sbjct: 103 RRISGKSTF 111>NP_076971 Length = 337 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RTMSGESTF 9 RTM ESTF Sbjct: 176 RTMEIESTF 184>XP_005272657 Length = 661 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 R +SG+STF Sbjct: 103 RRISGKSTF 111>XP_005271245 Length = 259 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RTMSGESTF 9 RTM ESTF Sbjct: 98 RTMEIESTF 106>XP_005271244 Length = 259 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RTMSGESTF 9 RTM ESTF Sbjct: 98 RTMEIESTF 106>XP_005271243 Length = 286 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RTMSGESTF 9 RTM ESTF Sbjct: 176 RTMEIESTF 184>XP_005271241 Length = 314 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RTMSGESTF 9 RTM ESTF Sbjct: 153 RTMEIESTF 161>XP_005259280 Length = 623 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RTMSGESTF 9 R SGE+TF Sbjct: 309 RVHSGETTF 317>XP_005259279 Length = 706 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RTMSGESTF 9 R SGE+TF Sbjct: 392 RVHSGETTF 400>NP_037494 Length = 706 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RTMSGESTF 9 R SGE+TF Sbjct: 392 RVHSGETTF 400>NP_001274103 Length = 1582 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 RT SG+S+F Sbjct: 1380 RTGSGKSSF 1388>NP_000343 Length = 1581 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 RT SG+S+F Sbjct: 1379 RTGSGKSSF 1387>NP_055959 Length = 949 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSGESTF 9 +SG+STF Sbjct: 864 LSGQSTF 870>XP_005255915 Length = 1099 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSGESTF 9 +SG+STF Sbjct: 1001 LSGQSTF 1007>XP_006718349 Length = 1646 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTMSGESTF 9 RT SG+S+F Sbjct: 1379 RTGSGKSSF 1387>NP_002431 Length = 936 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSGESTF 9 MSG+ST+ Sbjct: 683 MSGKSTY 689>XP_005257785 Length = 1887 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TMSGEST 8 T+SG+ST Sbjct: 258 TLSGDST 264>NP_115510 Length = 1663 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TMSGEST 8 T+SG+ST Sbjct: 92 TLSGDST 98Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.117 0.307 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 592,011 Number of extensions: 940 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |