Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005179 18 1135 NP_006763 17 3301 NP_008958 17 4312 NP_001036249 17 4312 NP_001166094 17 4312 NP_002490 17 4312 XP_005254473 17 4312 XP_005254472 17 4312 XP_005254471 17 4312 XP_005254470 17 4312 XP_005254469 17 4312 XP_005254468 17 4312 XP_005254467 17 4312 XP_005254465 17 4312 XP_006714268 17 4312 XP_005263031 17 4312 XP_006714267 17 4312 XP_006714266 17 4312 XP_006714265 17 4312 XP_006714264 17 4312 XP_006714263 17 4312 XP_006714262 17 4312 NP_001166095 17 4312 NP_079255 16 7355 NP_149035 16 7355 NP_001015056 16 7355 NP_001015055 16 7355 NP_001106203 16 7355 XP_005268373 16 7355 XP_005268372 16 7355 XP_005268371 16 7355 XP_006720031 16 7355 XP_005268370 16 7355 XP_006720030 16 7355 XP_005268369 16 7355 XP_006720029 16 7355 XP_005268367 16 7355 XP_005268366 16 7355 XP_005268365 16 7355 XP_005268364 16 7355 XP_005264536 16 7355 XP_005264535 16 7355 NP_001243779 15 9605 NP_596869 15 9605 NP_694996 15 9605 NP_653184 15 9605 NP_001034451 15 9605 NP_001265227 15 9605 XP_006712787 15 9605 XP_006712786 15 9605 NP_001254479 15 9605>NP_005179 Length = 906 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSDIS A Sbjct: 788 RTLSDISNA 796>NP_006763 Length = 1343 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 R L+DISTA Sbjct: 716 RLLNDISTA 724>NP_008958 Length = 1522 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSD+S Sbjct: 309 RTLSDVS 315>NP_001036249 Length = 1113 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTLSDISTA 9 RT+SD++T+ Sbjct: 496 RTISDLTTS 504>NP_001166094 Length = 1408 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 627 RTLSDVPSA 635>NP_002490 Length = 1461 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 627 RTLSDVPSA 635>XP_005254473 Length = 1408 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 627 RTLSDVPSA 635>XP_005254472 Length = 1428 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 647 RTLSDVPSA 655>XP_005254471 Length = 1450 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 627 RTLSDVPSA 635>XP_005254470 Length = 1454 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 647 RTLSDVPSA 655>XP_005254469 Length = 1461 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 627 RTLSDVPSA 635>XP_005254468 Length = 1465 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 647 RTLSDVPSA 655>XP_005254467 Length = 1470 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 647 RTLSDVPSA 655>XP_005254465 Length = 1481 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 647 RTLSDVPSA 655>XP_006714268 Length = 1078 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTLSDISTA 9 RT+SD++T+ Sbjct: 496 RTISDLTTS 504>XP_005263031 Length = 1113 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTLSDISTA 9 RT+SD++T+ Sbjct: 496 RTISDLTTS 504>XP_006714267 Length = 1117 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTLSDISTA 9 RT+SD++T+ Sbjct: 496 RTISDLTTS 504>XP_006714266 Length = 1125 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTLSDISTA 9 RT+SD++T+ Sbjct: 496 RTISDLTTS 504>XP_006714265 Length = 1129 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTLSDISTA 9 RT+SD++T+ Sbjct: 496 RTISDLTTS 504>XP_006714264 Length = 1129 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTLSDISTA 9 RT+SD++T+ Sbjct: 496 RTISDLTTS 504>XP_006714263 Length = 1129 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTLSDISTA 9 RT+SD++T+ Sbjct: 496 RTISDLTTS 504>XP_006714262 Length = 1129 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RTLSDISTA 9 RT+SD++T+ Sbjct: 496 RTISDLTTS 504>NP_001166095 Length = 1450 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RTLSDISTA 9 RTLSD+ +A Sbjct: 627 RTLSDVPSA 635>NP_079255 Length = 1123 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 142 RTLSDIA 148>NP_149035 Length = 550 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTL+DIS Sbjct: 156 RTLTDIS 162>NP_001015056 Length = 513 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTL+DIS Sbjct: 119 RTLTDIS 125>NP_001015055 Length = 563 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTL+DIS Sbjct: 169 RTLTDIS 175>NP_001106203 Length = 1125 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 144 RTLSDIA 150>XP_005268373 Length = 984 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 142 RTLSDIA 148>XP_005268372 Length = 1043 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 201 RTLSDIA 207>XP_005268371 Length = 1067 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 148 RTLSDIA 154>XP_006720031 Length = 1080 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 74 RTLSDIA 80>XP_005268370 Length = 1112 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 106 RTLSDIA 112>XP_006720030 Length = 1128 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 122 RTLSDIA 128>XP_005268369 Length = 1132 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 126 RTLSDIA 132>XP_006720029 Length = 1150 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 144 RTLSDIA 150>XP_005268367 Length = 1154 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 148 RTLSDIA 154>XP_005268366 Length = 1180 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 174 RTLSDIA 180>XP_005268365 Length = 1182 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 201 RTLSDIA 207>XP_005268364 Length = 1207 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTLSDI+ Sbjct: 201 RTLSDIA 207>XP_005264536 Length = 465 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTL+DIS Sbjct: 169 RTLTDIS 175>XP_005264535 Length = 490 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RTLSDIS 7 RTL+DIS Sbjct: 169 RTLTDIS 175>NP_001243779 Length = 34350 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RTLSDIST 8 + LSDIST Sbjct: 8423 KKLSDIST 8430>NP_596869 Length = 33423 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RTLSDIST 8 + LSDIST Sbjct: 7496 KKLSDIST 7503>NP_694996 Length = 2526 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RTLSDIST 8 RT+ D+ST Sbjct: 190 RTIRDLST 197>NP_653184 Length = 381 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RTLSDI 6 RTLSDI Sbjct: 163 RTLSDI 168>NP_001034451 Length = 427 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RTLSDI 6 RTLSDI Sbjct: 163 RTLSDI 168>NP_001265227 Length = 2614 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RTLSDIST 8 RT+ D+ST Sbjct: 190 RTIRDLST 197>XP_006712787 Length = 33978 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RTLSDIST 8 + LSDIST Sbjct: 8424 KKLSDIST 8431>XP_006712786 Length = 35484 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RTLSDIST 8 + LSDIST Sbjct: 8424 KKLSDIST 8431>NP_001254479 Length = 35991 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RTLSDIST 8 + LSDIST Sbjct: 8740 KKLSDIST 8747Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.115 0.271 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 333,436 Number of extensions: 396 Number of successful extensions: 51 Number of sequences better than 10000.0: 51 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 51 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |