Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 20 390 NP_066124 20 390 XP_006717999 20 390 NP_689938 17 4312 NP_001138667 17 4312 NP_001269662 17 4312 NP_001269663 17 4312 NP_116218 16 7355 XP_006719717 16 7355 XP_005254027 16 7355 XP_006717822 16 7355 XP_006717821 16 7355 XP_005269749 16 7355 XP_006717820 16 7355 XP_006717609 16 7355 NP_065081 16 7355 NP_001007469 15 9605 NP_003064 15 9605 NP_001153148 15 9605 NP_006363 15 9605 NP_001153149 15 9605 NP_001153145 15 9605 NP_004681 15 9605 NP_776189 15 9605 NP_056331 15 9605 NP_001123501 15 9605 NP_001095869 15 9605 NP_001095868 15 9605 NP_001095867 15 9605 NP_005817 15 9605 NP_001245139 15 9605 NP_000927 15 9605 NP_001153147 15 9605 XP_006723106 15 9605 XP_006723105 15 9605 XP_005273949 15 9605 XP_005252905 15 9605 XP_005252904 15 9605 XP_005248694 15 9605 XP_005248693 15 9605 XP_005248692 15 9605 XP_006714843 15 9605 XP_005268474 15 9605 XP_005268472 15 9605 XP_005268471 15 9605 XP_005245768 15 9605 NP_036326 15 9605 NP_001153146 15 9605 NP_604393 15 9605>NP_065681 Length = 1072 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RTGYTTVAV 9 R GYTTVAV Sbjct: 749 RAGYTTVAV 757>NP_066124 Length = 1114 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RTGYTTVAV 9 R GYTTVAV Sbjct: 749 RAGYTTVAV 757>XP_006717999 Length = 1207 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RTGYTTVAV 9 R GYTTVAV Sbjct: 842 RAGYTTVAV 850>NP_689938 Length = 654 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GYTTVAV 9 GY+TVAV Sbjct: 368 GYSTVAV 374>NP_001138667 Length = 691 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GYTTVAV 9 GY+TVAV Sbjct: 368 GYSTVAV 374>NP_001269662 Length = 690 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GYTTVAV 9 GY+TVAV Sbjct: 368 GYSTVAV 374>NP_001269663 Length = 557 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GYTTVAV 9 GY+TVAV Sbjct: 234 GYSTVAV 240>NP_116218 Length = 452 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GYTTVAV 9 GY TVAV Sbjct: 429 GYETVAV 435>XP_006719717 Length = 452 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GYTTVAV 9 GY TVAV Sbjct: 429 GYETVAV 435>XP_005254027 Length = 452 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GYTTVAV 9 GY TVAV Sbjct: 429 GYETVAV 435>XP_006717822 Length = 810 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RTGYTTVAV 9 R+GYT + V Sbjct: 458 RSGYTRIPV 466>XP_006717821 Length = 846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RTGYTTVAV 9 R+GYT + V Sbjct: 458 RSGYTRIPV 466>XP_005269749 Length = 901 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RTGYTTVAV 9 R+GYT + V Sbjct: 458 RSGYTRIPV 466>XP_006717820 Length = 949 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RTGYTTVAV 9 R+GYT + V Sbjct: 458 RSGYTRIPV 466>XP_006717609 Length = 290 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RTGYTTVAV 9 R GY+ VA+ Sbjct: 49 RIGYSVVAI 57>NP_065081 Length = 951 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RTGYTTVAV 9 R+GYT + V Sbjct: 458 RSGYTRIPV 466>NP_001007469 Length = 376 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 GYTTVA 8 GYTT+A Sbjct: 71 GYTTLA 76>NP_003064 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 GYTTVA 8 GYTT+A Sbjct: 80 GYTTLA 85>NP_001153148 Length = 561 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 130 RTGYT 134>NP_006363 Length = 623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 130 RTGYT 134>NP_001153149 Length = 562 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 130 RTGYT 134>NP_001153145 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 32 RTGYT 36>NP_004681 Length = 1130 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 924 RTGYT 928>NP_776189 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RTGYTTV 7 RTG TTV Sbjct: 157 RTGETTV 163>NP_056331 Length = 353 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 GYTTVA 8 GYTT+A Sbjct: 82 GYTTLA 87>NP_001123501 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RTGYTTV 7 RTG TTV Sbjct: 157 RTGETTV 163>NP_001095869 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 32 RTGYT 36>NP_001095868 Length = 636 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 133 RTGYT 137>NP_001095867 Length = 532 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 32 RTGYT 36>NP_005817 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 133 RTGYT 137>NP_001245139 Length = 353 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 GYTTVA 8 GYTT+A Sbjct: 82 GYTTLA 87>NP_000927 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 128 RTGYT 132>NP_001153147 Length = 588 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 130 RTGYT 134>XP_006723106 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 126 RTGYT 130>XP_006723105 Length = 1028 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 126 RTGYT 130>XP_005273949 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 GYTTVA 8 GYTT+A Sbjct: 96 GYTTLA 101>XP_005252905 Length = 1854 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 RTGYTT 6 RTG+TT Sbjct: 723 RTGHTT 728>XP_005252904 Length = 1855 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 RTGYTT 6 RTG+TT Sbjct: 723 RTGHTT 728>XP_005248694 Length = 623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 130 RTGYT 134>XP_005248693 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 32 RTGYT 36>XP_005248692 Length = 561 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 130 RTGYT 134>XP_006714843 Length = 291 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RTGYTTV 7 RTG TTV Sbjct: 157 RTGETTV 163>XP_005268474 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RTGYTTV 7 RTG TTV Sbjct: 157 RTGETTV 163>XP_005268472 Length = 349 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RTGYTTV 7 RTG TTV Sbjct: 157 RTGETTV 163>XP_005268471 Length = 349 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RTGYTTV 7 RTG TTV Sbjct: 157 RTGETTV 163>XP_005245768 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 133 RTGYT 137>NP_036326 Length = 1849 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 RTGYTT 6 RTG+TT Sbjct: 717 RTGHTT 722>NP_001153146 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 130 RTGYT 134>NP_604393 Length = 994 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 RTGYT 5 RTGYT Sbjct: 92 RTGYT 96Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.127 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 485,764 Number of extensions: 520 Number of successful extensions: 49 Number of sequences better than 10000.0: 49 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 49 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |