Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1482 NP_671714 18 1482 XP_006715890 18 1482 XP_005250160 18 1482 XP_005250159 18 1482 NP_001166245 18 1935 XP_005258618 18 1935 NP_997208 18 1935 NP_570853 16 7355 NP_570854 16 7355 NP_000453 16 7355 NP_055928 16 7355 NP_001245344 16 7355 NP_065860 16 7355 NP_001245347 16 7355 NP_001245346 16 7355 NP_001245345 16 7355 XP_005256618 16 7355 XP_005256617 16 7355 XP_005268328 16 7355 XP_006720739 16 7355 XP_005268327 16 7355 XP_005268326 16 7355 XP_005268324 16 7355 XP_005268325 16 7355 XP_006720738 16 7355 XP_006720737 16 7355 XP_006720736 16 7355 XP_006718956 16 7355 NP_058640 15 9605 NP_008864 15 9605 NP_000334 15 9605 NP_570855 15 9605 NP_570856 15 9605 NP_065683 15 9605 NP_001243243 15 9605 NP_065803 15 9605 XP_005250451 15 9605 XP_005250450 15 9605 XP_006713672 15 9605 NP_060523 15 9605>NP_005742 Length = 3907 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSVLLAAF 8 RSVLLAAF Sbjct: 3038 RSVLLAAF 3045>NP_671714 Length = 3899 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSVLLAAF 8 RSVLLAAF Sbjct: 3030 RSVLLAAF 3037>XP_006715890 Length = 3860 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSVLLAAF 8 RSVLLAAF Sbjct: 2991 RSVLLAAF 2998>XP_005250160 Length = 3939 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSVLLAAF 8 RSVLLAAF Sbjct: 3070 RSVLLAAF 3077>XP_005250159 Length = 3952 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RSVLLAAF 8 RSVLLAAF Sbjct: 3083 RSVLLAAF 3090>NP_001166245 Length = 716 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVLLAAFW 9 S LLAAFW Sbjct: 187 SGLLAAFW 194>XP_005258618 Length = 682 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVLLAAFW 9 S LLAAFW Sbjct: 187 SGLLAAFW 194>NP_997208 Length = 716 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVLLAAFW 9 S LLAAFW Sbjct: 187 SGLLAAFW 194>NP_570853 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 761 SVLIREFW 768>NP_570854 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 781 SVLIREFW 788>NP_000453 Length = 875 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 784 SVLIREFW 791>NP_055928 Length = 2961 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL + FW Sbjct: 958 SVLFSLFW 965>NP_001245344 Length = 1168 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSVLLAAFW 9 RS++ AFW Sbjct: 309 RSIINWAFW 317>NP_065860 Length = 1191 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSVLLAAFW 9 RS++ AFW Sbjct: 332 RSIINWAFW 340>NP_001245347 Length = 1155 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSVLLAAFW 9 RS++ AFW Sbjct: 296 RSIINWAFW 304>NP_001245346 Length = 1155 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSVLLAAFW 9 RS++ AFW Sbjct: 296 RSIINWAFW 304>NP_001245345 Length = 1165 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSVLLAAFW 9 RS++ AFW Sbjct: 306 RSIINWAFW 314>XP_005256618 Length = 2962 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL + FW Sbjct: 959 SVLFSLFW 966>XP_005256617 Length = 2966 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL + FW Sbjct: 959 SVLFSLFW 966>XP_005268328 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 761 SVLIREFW 768>XP_006720739 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 761 SVLIREFW 768>XP_005268327 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 761 SVLIREFW 768>XP_005268326 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 761 SVLIREFW 768>XP_005268324 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 761 SVLIREFW 768>XP_005268325 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 761 SVLIREFW 768>XP_006720738 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 761 SVLIREFW 768>XP_006720737 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 781 SVLIREFW 788>XP_006720736 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVL+ FW Sbjct: 781 SVLIREFW 788>XP_006718956 Length = 1191 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSVLLAAFW 9 RS++ AFW Sbjct: 332 RSIINWAFW 340>NP_058640 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RSVLLAAFW 9 RSV L+AF+ Sbjct: 76 RSVYLSAFF 84>NP_008864 Length = 718 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 LLAAFW 9 LLA FW Sbjct: 457 LLAIFW 462>NP_000334 Length = 664 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 LLAAFW 9 LLA FW Sbjct: 472 LLAIFW 477>NP_570855 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VLLAAFW 9 +LLAA W Sbjct: 418 MLLAALW 424>NP_570856 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VLLAAFW 9 +LLAA W Sbjct: 418 MLLAALW 424>NP_065683 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VLLAAFW 9 +LLAA W Sbjct: 418 MLLAALW 424>NP_001243243 Length = 537 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 LLAAFW 9 LLA FW Sbjct: 345 LLAIFW 350>NP_065803 Length = 1215 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 5/7 (71%) Query: 3 VLLAAFW 9 +LL FW Sbjct: 533 ILLVVFW 539>XP_005250451 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VLLAAFW 9 +LLAA W Sbjct: 418 MLLAALW 424>XP_005250450 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VLLAAFW 9 +LLAA W Sbjct: 418 MLLAALW 424>XP_006713672 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 SVLL A W Sbjct: 445 SVLLLASW 452>NP_060523 Length = 395 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SVLLAAFW 9 S+LL A W Sbjct: 296 SILLVATW 303Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.135 0.506 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 306,917 Number of extensions: 450 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |