Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001243000 19 869 XP_005257603 19 869 XP_006722058 19 869 XP_005257602 19 869 NP_001137357 17 4312 NP_001137358 17 4312 NP_001231921 17 4312 NP_001231919 17 4312 NP_002471 17 4312 NP_444282 17 4312 NP_758954 17 4312 NP_001245140 17 4312 XP_005268950 17 4312 XP_005268949 17 4312 XP_005268948 17 4312 XP_005268946 17 4312 XP_005268944 17 4312 XP_005268945 17 4312 XP_005268943 17 4312 XP_005268942 17 4312 NP_689496 16 5631 NP_001166109 16 5631 XP_005266021 16 5631 XP_006714968 16 5631 XP_005266020 16 5631 NP_112589 16 7355 XP_006711412 16 7355 NP_001258857 15 9605 NP_001258856 15 9605 NP_060046 15 9605 XP_005252149 15 9605 XP_005252148 15 9605 XP_005252147 15 9605 XP_005252146 15 9605 XP_006717239 15 9605>NP_001243000 Length = 5207 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RSSSSLRTR 9 RSSS+LRTR Sbjct: 2109 RSSSALRTR 2117>XP_005257603 Length = 5256 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RSSSSLRTR 9 RSSS+LRTR Sbjct: 2158 RSSSALRTR 2166>XP_006722058 Length = 5256 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RSSSSLRTR 9 RSSS+LRTR Sbjct: 2158 RSSSALRTR 2166>XP_005257602 Length = 5256 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RSSSSLRTR 9 RSSS+LRTR Sbjct: 2158 RSSSALRTR 2166>NP_001137357 Length = 1030 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>NP_001137358 Length = 943 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 430 RDSSSLRT 437>NP_001231921 Length = 974 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>NP_001231919 Length = 995 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>NP_002471 Length = 1030 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>NP_444282 Length = 780 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RSSSSLRTR 9 RSSS++R+R Sbjct: 365 RSSSTIRSR 373>NP_758954 Length = 292 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RSSSSLRTR 9 RSSSSLR + Sbjct: 200 RSSSSLRKK 208>NP_001245140 Length = 280 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RSSSSLRTR 9 RSSSSLR + Sbjct: 188 RSSSSLRKK 196>XP_005268950 Length = 931 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>XP_005268949 Length = 987 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>XP_005268948 Length = 990 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>XP_005268946 Length = 999 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>XP_005268944 Length = 1005 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>XP_005268945 Length = 1005 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>XP_005268943 Length = 1034 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>XP_005268942 Length = 1046 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RSSSSLRT 8 R SSSLRT Sbjct: 517 RDSSSLRT 524>NP_689496 Length = 867 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 RSSSSLR 7 RSSSSLR Sbjct: 146 RSSSSLR 152>NP_001166109 Length = 900 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 RSSSSLR 7 RSSSSLR Sbjct: 179 RSSSSLR 185>XP_005266021 Length = 786 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 RSSSSLR 7 RSSSSLR Sbjct: 179 RSSSSLR 185>XP_006714968 Length = 804 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 RSSSSLR 7 RSSSSLR Sbjct: 179 RSSSSLR 185>XP_005266020 Length = 835 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 RSSSSLR 7 RSSSSLR Sbjct: 179 RSSSSLR 185>NP_112589 Length = 268 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSSSSLRTR 9 RSS S+R R Sbjct: 179 RSSGSMRNR 187>XP_006711412 Length = 636 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SSSSLRTR 9 SSSS RTR Sbjct: 38 SSSSQRTR 45>NP_001258857 Length = 1304 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSSSLRTR 9 S+SSLRT+ Sbjct: 1185 SASSLRTQ 1192>NP_001258856 Length = 1335 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSSSLRTR 9 S+SSLRT+ Sbjct: 1216 SASSLRTQ 1223>NP_060046 Length = 1401 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSSSLRTR 9 S+SSLRT+ Sbjct: 1282 SASSLRTQ 1289>XP_005252149 Length = 921 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSSSLRTR 9 S+SSLRT+ Sbjct: 802 SASSLRTQ 809>XP_005252148 Length = 1043 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSSSLRTR 9 S+SSLRT+ Sbjct: 924 SASSLRTQ 931>XP_005252147 Length = 1329 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSSSLRTR 9 S+SSLRT+ Sbjct: 1210 SASSLRTQ 1217>XP_005252146 Length = 1342 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSSSLRTR 9 S+SSLRT+ Sbjct: 1223 SASSLRTQ 1230>XP_006717239 Length = 1401 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSSSLRTR 9 S+SSLRT+ Sbjct: 1282 SASSLRTQ 1289Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.106 0.234 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 341,643 Number of extensions: 579 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |