Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_073713 19 665 NP_005059 17 4312 XP_005261949 17 4312 XP_005267157 17 4312 XP_005275966 17 4312 NP_001005280 16 5631 NP_001005226 16 5631 NP_001182000 16 5631 NP_001005192 16 5631 NP_036396 16 5631 NP_001182001 16 5631 NP_039229 16 5631 XP_005261571 16 5631 XP_005261570 16 5631 XP_005261569 16 5631 XP_006724290 16 5631 XP_005261568 16 5631 XP_005261567 16 5631 XP_005261566 16 5631 NP_149046 16 5631 NP_853631 16 7355 NP_001278238 15 9605 NP_612192 15 9605 NP_002561 15 9605 NP_115486 15 9605 NP_005975 15 9605 NP_001243463 15 9605 NP_060897 15 9605 NP_060043 15 9605 XP_005259643 15 9605 XP_005259642 15 9605 XP_005259640 15 9605 XP_006722679 15 9605 NP_001078844 15 9605 NP_001128712 15 9605>NP_073713 Length = 985 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RSSLMYGTA 9 RSSL YGTA Sbjct: 38 RSSLTYGTA 46>NP_005059 Length = 766 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RSSLMYGTA 9 RSSL YG A Sbjct: 442 RSSLCYGFA 450>XP_005261949 Length = 210 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RSSLMYGT 8 RSS +YGT Sbjct: 187 RSSTIYGT 194>XP_005267157 Length = 766 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RSSLMYGTA 9 RSSL YG A Sbjct: 442 RSSLCYGFA 450>XP_005275966 Length = 210 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RSSLMYGT 8 RSS +YGT Sbjct: 187 RSSTIYGT 194>NP_001005280 Length = 316 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLMYGTA 9 SL YGTA Sbjct: 249 SLFYGTA 255>NP_001005226 Length = 313 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLMYGTA 9 SL YGTA Sbjct: 249 SLFYGTA 255>NP_001182000 Length = 407 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 151 SSCMYGT 157>NP_001005192 Length = 311 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLMYGTA 9 SL YGTA Sbjct: 249 SLFYGTA 255>NP_036396 Length = 407 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 151 SSCMYGT 157>NP_001182001 Length = 341 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 85 SSCMYGT 91>NP_039229 Length = 312 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLMYGTA 9 SL YGTA Sbjct: 248 SLFYGTA 254>XP_005261571 Length = 348 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 85 SSCMYGT 91>XP_005261570 Length = 348 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 85 SSCMYGT 91>XP_005261569 Length = 365 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 184 SSCMYGT 190>XP_006724290 Length = 414 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 151 SSCMYGT 157>XP_005261568 Length = 414 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 151 SSCMYGT 157>XP_005261567 Length = 440 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 184 SSCMYGT 190>XP_005261566 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SS MYGT Sbjct: 184 SSCMYGT 190>NP_149046 Length = 357 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLMYGTA 9 SL YGTA Sbjct: 249 SLFYGTA 255>NP_853631 Length = 160 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSLMYGTA 9 SSL+Y TA Sbjct: 27 SSLVYSTA 34>NP_001278238 Length = 895 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SSLMYGTA 9 S ++YGTA Sbjct: 552 SLILYGTA 559>NP_612192 Length = 956 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SSLMYGTA 9 S ++YGTA Sbjct: 626 SLILYGTA 633>NP_002561 Length = 969 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SSLMYGTA 9 S ++YGTA Sbjct: 626 SLILYGTA 633>NP_115486 Length = 542 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LMYGTA 9 L+YGTA Sbjct: 131 LLYGTA 136>NP_005975 Length = 311 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SSLMYGT 8 SSL+YG+ Sbjct: 88 SSLLYGS 94>NP_001243463 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SSLMYGT 8 SSL+YG+ Sbjct: 95 SSLLYGS 101>NP_060897 Length = 651 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RSSLMYGT 8 RSS+MY T Sbjct: 96 RSSIMYLT 103>NP_060043 Length = 755 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LMYGTA 9 L+YGTA Sbjct: 574 LLYGTA 579>XP_005259643 Length = 567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LMYGTA 9 L+YGTA Sbjct: 386 LLYGTA 391>XP_005259642 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LMYGTA 9 L+YGTA Sbjct: 574 LLYGTA 579>XP_005259640 Length = 746 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LMYGTA 9 L+YGTA Sbjct: 565 LLYGTA 570>XP_006722679 Length = 2128 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LMYGTA 9 L+YGTA Sbjct: 1624 LLYGTA 1629>NP_001078844 Length = 272 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SSL YGT Sbjct: 146 SSLEYGT 152>NP_001128712 Length = 315 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSLMYGT 8 SSL YGT Sbjct: 189 SSLEYGT 195Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.121 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 390,747 Number of extensions: 421 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |