Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005148 20 299 NP_009297 20 299 NP_055553 17 4312 XP_005257925 17 4312 XP_005257924 17 4312 XP_005257923 17 4312 XP_005257922 17 4312 XP_005257921 17 4312 XP_006722263 17 4312 XP_005257920 17 4312 NP_055054 16 7355 NP_005742 15 9605 NP_671714 15 9605 NP_001002836 15 9605 NP_001230126 15 9605 XP_006724643 15 9605 XP_006723482 15 9605 XP_005259380 15 9605 XP_005259381 15 9605 XP_005259373 15 9605 XP_006723481 15 9605 XP_006723480 15 9605 XP_006715890 15 9605 XP_005250160 15 9605 XP_005250159 15 9605 NP_055890 15 9605 NP_115799 15 9605>NP_005148 Length = 1130 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RSSEQMASH 9 R+SEQMASH Sbjct: 1045 RNSEQMASH 1053>NP_009297 Length = 1149 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RSSEQMASH 9 R+SEQMASH Sbjct: 1064 RNSEQMASH 1072>NP_055553 Length = 1356 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSEQMASH 9 S+EQM SH Sbjct: 696 STEQMLSH 703>XP_005257925 Length = 850 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSEQMASH 9 S+EQM SH Sbjct: 160 STEQMLSH 167>XP_005257924 Length = 1122 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSEQMASH 9 S+EQM SH Sbjct: 432 STEQMLSH 439>XP_005257923 Length = 1131 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSEQMASH 9 S+EQM SH Sbjct: 441 STEQMLSH 448>XP_005257922 Length = 1366 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSEQMASH 9 S+EQM SH Sbjct: 706 STEQMLSH 713>XP_005257921 Length = 1370 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSEQMASH 9 S+EQM SH Sbjct: 710 STEQMLSH 717>XP_006722263 Length = 1390 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSEQMASH 9 S+EQM SH Sbjct: 700 STEQMLSH 707>XP_005257920 Length = 1390 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSEQMASH 9 S+EQM SH Sbjct: 700 STEQMLSH 707>NP_055054 Length = 351 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSSEQMA 7 RSSE+MA Sbjct: 29 RSSEEMA 35>NP_005742 Length = 3907 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 R EQ+A+H Sbjct: 2109 REVEQLANH 2117>NP_671714 Length = 3899 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 R EQ+A+H Sbjct: 2109 REVEQLANH 2117>NP_001002836 Length = 382 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 EQMASH 9 +QMASH Sbjct: 18 QQMASH 23>NP_001230126 Length = 73 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RSSEQMASH 9 RSS ASH Sbjct: 6 RSSRSTASH 14>XP_006724643 Length = 1283 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RSSEQMASH 9 RSS ASH Sbjct: 6 RSSRSTASH 14>XP_006723482 Length = 395 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 RSS ++A H Sbjct: 46 RSSSKLAQH 54>XP_005259380 Length = 566 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 RSS ++A H Sbjct: 217 RSSSKLAQH 225>XP_005259381 Length = 566 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 RSS ++A H Sbjct: 217 RSSSKLAQH 225>XP_005259373 Length = 664 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 RSS ++A H Sbjct: 315 RSSSKLAQH 323>XP_006723481 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 RSS ++A H Sbjct: 363 RSSSKLAQH 371>XP_006723480 Length = 748 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 RSS ++A H Sbjct: 399 RSSSKLAQH 407>XP_006715890 Length = 3860 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 R EQ+A+H Sbjct: 2062 REVEQLANH 2070>XP_005250160 Length = 3939 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 R EQ+A+H Sbjct: 2141 REVEQLANH 2149>XP_005250159 Length = 3952 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 R EQ+A+H Sbjct: 2154 REVEQLANH 2162>NP_055890 Length = 949 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 RSSEQMASH 9 RSS ASH Sbjct: 6 RSSRSTASH 14>NP_115799 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSSEQMASH 9 RSS ++A H Sbjct: 279 RSSSKLAQH 287Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.296 0.0958 0.229 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 354,329 Number of extensions: 491 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |