Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001161842 16 5631 NP_055595 16 5631 NP_001035879 16 5631 NP_653316 16 5631 XP_006719908 16 5631 XP_006719907 16 5631 XP_006715348 16 5631 XP_005249560 16 5631 XP_005264948 16 5631 XP_005264946 16 5631 NP_001171079 16 7355 NP_001934 16 7355 NP_065988 16 7355 NP_065750 16 7355 NP_001763 16 7355 NP_004317 16 7355 NP_001241872 16 7355 NP_001129069 16 7355 NP_060554 16 7355 NP_077024 16 7355 XP_005259491 16 7355 XP_005259490 16 7355 XP_005267986 16 7355 XP_006715118 16 7355 XP_005264480 16 7355 XP_005264478 16 7355 XP_005264475 16 7355 XP_005277475 16 7355 XP_005277474 16 7355 XP_006711546 16 7355 XP_005273028 16 7355 XP_005245421 16 7355 XP_006711532 16 7355 XP_005245420 16 7355 NP_277047 15 9605 NP_000292 15 9605 NP_003309 15 9605 NP_001160163 15 9605 NP_078966 15 9605 NP_001229725 15 9605 NP_001229724 15 9605 NP_055209 15 9605 NP_055484 15 9605 XP_006723004 15 9605 XP_005256320 15 9605 NP_001139669 15 9605 NP_001001919 15 9605>NP_001161842 Length = 1782 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SPVVQN 7 SPVVQN Sbjct: 1132 SPVVQN 1137>NP_055595 Length = 1698 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SPVVQN 7 SPVVQN Sbjct: 1048 SPVVQN 1053>NP_001035879 Length = 523 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SPVVQNKL 9 SPVV N+L Sbjct: 164 SPVVSNEL 171>NP_653316 Length = 833 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SPVVQNK 8 SPVV NK Sbjct: 46 SPVVSNK 52>XP_006719908 Length = 427 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SPVVQNKL 9 SPVV N+L Sbjct: 164 SPVVSNEL 171>XP_006719907 Length = 523 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SPVVQNKL 9 SPVV N+L Sbjct: 164 SPVVSNEL 171>XP_006715348 Length = 1734 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SPVVQN 7 SPVVQN Sbjct: 1080 SPVVQN 1085>XP_005249560 Length = 1750 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SPVVQN 7 SPVVQN Sbjct: 1100 SPVVQN 1105>XP_005264948 Length = 581 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SPVVQNK 8 SPVV NK Sbjct: 46 SPVVSNK 52>XP_005264946 Length = 810 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SPVVQNK 8 SPVV NK Sbjct: 46 SPVVSNK 52>NP_001171079 Length = 310 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SPVVQNKL 9 SPV NKL Sbjct: 71 SPVATNKL 78>NP_001934 Length = 1118 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PVVQNKL 9 PVV+NK+ Sbjct: 270 PVVENKV 276>NP_065988 Length = 2048 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RSPVVQNK 8 RSP++ NK Sbjct: 1570 RSPMMNNK 1577>NP_065750 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RSPVVQN 7 ++PVVQN Sbjct: 199 KTPVVQN 205>NP_001763 Length = 364 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SPVVQNKL 9 SPV NKL Sbjct: 71 SPVATNKL 78>NP_004317 Length = 1426 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SPVVQNKL 9 SP V+NKL Sbjct: 278 SPGVENKL 285>NP_001241872 Length = 1796 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SPVVQNKL 9 SPV+Q+K+ Sbjct: 1652 SPVLQHKI 1659>NP_001129069 Length = 1870 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SPVVQNKL 9 SPV+Q+K+ Sbjct: 1652 SPVLQHKI 1659>NP_060554 Length = 1843 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SPVVQNKL 9 SPV+Q+K+ Sbjct: 1625 SPVLQHKI 1632>NP_077024 Length = 678 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSPVVQNKL 9 R PVV NK+ Sbjct: 592 RDPVVINKV 600>XP_005259491 Length = 293 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SPVVQNKL 9 SPV NKL Sbjct: 71 SPVATNKL 78>XP_005259490 Length = 348 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SPVVQNKL 9 SPV NKL Sbjct: 71 SPVATNKL 78>XP_005267986 Length = 2022 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RSPVVQNK 8 RSP++ NK Sbjct: 1544 RSPMMNNK 1551>XP_006715118 Length = 311 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RSPVVQNK 8 R PV+QN+ Sbjct: 304 RIPVIQNE 311>XP_005264480 Length = 1842 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SPVVQNKL 9 SPV+Q+K+ Sbjct: 1624 SPVLQHKI 1631>XP_005264478 Length = 1844 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SPVVQNKL 9 SPV+Q+K+ Sbjct: 1626 SPVLQHKI 1633>XP_005264475 Length = 2027 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SPVVQNKL 9 SPV+Q+K+ Sbjct: 1653 SPVLQHKI 1660>XP_005277475 Length = 1352 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SPVVQNKL 9 SP V+NKL Sbjct: 204 SPGVENKL 211>XP_005277474 Length = 1414 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SPVVQNKL 9 SP V+NKL Sbjct: 278 SPGVENKL 285>XP_006711546 Length = 1426 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SPVVQNKL 9 SP V+NKL Sbjct: 278 SPGVENKL 285>XP_005273028 Length = 1426 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SPVVQNKL 9 SP V+NKL Sbjct: 278 SPGVENKL 285>XP_005245421 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RSPVVQN 7 ++PVVQN Sbjct: 199 KTPVVQN 205>XP_006711532 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RSPVVQN 7 ++PVVQN Sbjct: 199 KTPVVQN 205>XP_005245420 Length = 599 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RSPVVQN 7 ++PVVQN Sbjct: 205 KTPVVQN 211>NP_277047 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RSPVVQNKL 9 R+P QNK+ Sbjct: 300 RNPYFQNKV 308>NP_000292 Length = 810 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 PVVQNKL 9 PV++NK+ Sbjct: 722 PVIENKV 728>NP_003309 Length = 857 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RSPVVQN 7 R+PVV+N Sbjct: 467 RTPVVKN 473>NP_001160163 Length = 856 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RSPVVQN 7 R+PVV+N Sbjct: 466 RTPVVKN 472>NP_078966 Length = 14507 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 RSPVVQ 6 RSPV+Q Sbjct: 10579 RSPVIQ 10584>NP_001229725 Length = 696 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SPVVQNKL 9 SP +NKL Sbjct: 241 SPATENKL 248>NP_001229724 Length = 696 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SPVVQNKL 9 SP +NKL Sbjct: 241 SPATENKL 248>NP_055209 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SPVVQNKL 9 SPVV+N + Sbjct: 25 SPVVKNSI 32>NP_055484 Length = 819 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SPVVQNKL 9 SP +NKL Sbjct: 364 SPATENKL 371>XP_006723004 Length = 6443 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 RSPVVQ 6 RSPV+Q Sbjct: 2493 RSPVIQ 2498>XP_005256320 Length = 819 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SPVVQNKL 9 SP +NKL Sbjct: 364 SPATENKL 371>NP_001139669 Length = 7081 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VVQNKL 9 VVQNKL Sbjct: 3849 VVQNKL 3854>NP_001001919 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RSPVVQNKL 9 R P++ NK+ Sbjct: 131 RYPIIMNKV 139Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.128 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 726,830 Number of extensions: 1189 Number of successful extensions: 47 Number of sequences better than 10000.0: 47 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 47 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |