Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001167558 19 869 NP_858045 19 869 NP_006525 19 869 NP_001167559 19 869 NP_001231498 17 4312 NP_932071 17 4312 NP_001231496 17 4312 NP_001187 17 4312 NP_001231499 17 4312 NP_001231501 17 4312 NP_932070 17 4312 NP_976249 16 5631 NP_056261 16 7355 NP_060082 16 7355 NP_056075 16 7355 NP_001138505 16 7355 XP_006722767 16 7355 XP_005259889 16 7355 XP_006719555 16 7355 XP_005253638 16 7355 XP_006719554 16 7355 XP_006711822 16 7355 XP_006711821 16 7355 NP_001258941 15 9605 NP_001451 15 9605 NP_203755 15 9605 NP_001258942 15 9605 NP_000017 15 9605 NP_055817 15 9605 NP_296373 15 9605 NP_940931 15 9605 NP_001138525 15 9605 XP_005276312 15 9605 XP_006721944 15 9605 XP_006721943 15 9605 XP_006721942 15 9605 XP_005270314 15 9605 XP_005263448 15 9605 XP_005245096 15 9605 XP_005276022 15 9605 NP_001116850 15 9605 NP_002207 15 9605>NP_001167558 Length = 1423 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RSLLRNSLD 9 R LLRNSLD Sbjct: 1027 RPLLRNSLD 1035>NP_858045 Length = 1424 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RSLLRNSLD 9 R LLRNSLD Sbjct: 1027 RPLLRNSLD 1035>NP_006525 Length = 1420 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RSLLRNSLD 9 R LLRNSLD Sbjct: 1027 RPLLRNSLD 1035>NP_001167559 Length = 1415 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RSLLRNSLD 9 R LLRNSLD Sbjct: 1022 RPLLRNSLD 1030>NP_001231498 Length = 99 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL RN +D Sbjct: 91 RSLARNGMD 99>NP_932071 Length = 99 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL RN +D Sbjct: 91 RSLARNGMD 99>NP_001231496 Length = 195 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL RN +D Sbjct: 187 RSLARNGMD 195>NP_001187 Length = 195 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL RN +D Sbjct: 187 RSLARNGMD 195>NP_001231499 Length = 99 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL RN +D Sbjct: 91 RSLARNGMD 99>NP_001231501 Length = 99 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL RN +D Sbjct: 91 RSLARNGMD 99>NP_932070 Length = 241 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL RN +D Sbjct: 233 RSLARNGMD 241>NP_976249 Length = 211 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RSLLRNSLD 9 RSLL+ +LD Sbjct: 170 RSLLKETLD 178>NP_056261 Length = 2275 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RSLLRNSL 8 RSL RNS+ Sbjct: 998 RSLARNSI 1005>NP_060082 Length = 707 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSLLRNS 7 RSLL+NS Sbjct: 689 RSLLKNS 695>NP_056075 Length = 1162 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSLL S+D Sbjct: 856 RSLLEGSID 864>NP_001138505 Length = 122 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LRNSLD 9 LRNSLD Sbjct: 109 LRNSLD 114>XP_006722767 Length = 645 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSLL S+D Sbjct: 339 RSLLEGSID 347>XP_005259889 Length = 1130 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSLL S+D Sbjct: 824 RSLLEGSID 832>XP_006719555 Length = 469 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSLLRNS 7 RSLL+NS Sbjct: 451 RSLLKNS 457>XP_005253638 Length = 469 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSLLRNS 7 RSLL+NS Sbjct: 451 RSLLKNS 457>XP_006719554 Length = 630 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSLLRNS 7 RSLL+NS Sbjct: 612 RSLLKNS 618>XP_006711822 Length = 2266 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RSLLRNSL 8 RSL RNS+ Sbjct: 989 RSLARNSI 996>XP_006711821 Length = 2301 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RSLLRNSL 8 RSL RNS+ Sbjct: 1024 RSLARNSI 1031>NP_001258941 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL R +LD Sbjct: 510 RSLYRKTLD 518>NP_001451 Length = 471 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RSLLRNSL 8 RS+LRN L Sbjct: 240 RSMLRNVL 247>NP_203755 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL R +LD Sbjct: 510 RSLYRKTLD 518>NP_001258942 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL R +LD Sbjct: 510 RSLYRKTLD 518>NP_000017 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LLRNSLD 9 +LRN+LD Sbjct: 123 ILRNALD 129>NP_055817 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLRNSLD 9 LLR+SLD Sbjct: 407 LLRDSLD 413>NP_296373 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLRNSLD 9 LLR+SLD Sbjct: 407 LLRDSLD 413>NP_940931 Length = 1503 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RSLLRN 6 RSLLRN Sbjct: 425 RSLLRN 430>NP_001138525 Length = 856 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RSLLRN 6 RSLLRN Sbjct: 369 RSLLRN 374>XP_005276312 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLRNSLD 9 LLR+SLD Sbjct: 6 LLRHSLD 12>XP_006721944 Length = 1232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RSLLRN 6 RSLLRN Sbjct: 425 RSLLRN 430>XP_006721943 Length = 1456 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RSLLRN 6 RSLLRN Sbjct: 425 RSLLRN 430>XP_006721942 Length = 1503 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RSLLRN 6 RSLLRN Sbjct: 425 RSLLRN 430>XP_005270314 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSLLRNSLD 9 RSL R +LD Sbjct: 515 RSLYRKTLD 523>XP_005263448 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLRNSLD 9 LLR+SLD Sbjct: 6 LLRHSLD 12>XP_005245096 Length = 416 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RSLLRNSL 8 RS+LRN L Sbjct: 240 RSMLRNVL 247>XP_005276022 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LLRNSLD 9 LLR+SLD Sbjct: 6 LLRHSLD 12>NP_001116850 Length = 425 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LLRNSLD 9 +LRN+LD Sbjct: 123 ILRNALD 129>NP_002207 Length = 946 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RSLLRNSLD 9 RS+L+ SLD Sbjct: 610 RSILQMSLD 618Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.135 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 385,054 Number of extensions: 473 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |