Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 19 869 NP_653080 19 869 XP_005267292 19 869 XP_005267291 19 869 XP_005267290 19 869 NP_071921 17 4312 NP_001012398 17 4312 XP_005256155 17 4312 XP_005256154 17 4312 XP_005256153 17 4312 XP_005256152 17 4312 XP_005256151 17 4312 NP_060193 16 5631 NP_001273359 16 5631 NP_620147 16 5631 NP_596870 16 7355 NP_659417 16 7355 XP_006715416 16 7355 XP_006715415 16 7355 XP_005266895 16 7355>NP_005091 Length = 1782 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEASEKTM 9 SEASEKTM Sbjct: 1635 SEASEKTM 1642>NP_653080 Length = 1684 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEASEKTM 9 SEASEKTM Sbjct: 1537 SEASEKTM 1544>XP_005267292 Length = 1677 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEASEKTM 9 SEASEKTM Sbjct: 1530 SEASEKTM 1537>XP_005267291 Length = 1684 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEASEKTM 9 SEASEKTM Sbjct: 1537 SEASEKTM 1544>XP_005267290 Length = 1782 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SEASEKTM 9 SEASEKTM Sbjct: 1635 SEASEKTM 1642>NP_071921 Length = 292 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSEASEKTM 9 RSE EKT+ Sbjct: 15 RSEGEEKTL 23>NP_001012398 Length = 292 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSEASEKTM 9 RSE EKT+ Sbjct: 15 RSEGEEKTL 23>XP_005256155 Length = 293 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSEASEKTM 9 RSE EKT+ Sbjct: 15 RSEGEEKTL 23>XP_005256154 Length = 293 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSEASEKTM 9 RSE EKT+ Sbjct: 15 RSEGEEKTL 23>XP_005256153 Length = 293 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSEASEKTM 9 RSE EKT+ Sbjct: 15 RSEGEEKTL 23>XP_005256152 Length = 293 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSEASEKTM 9 RSE EKT+ Sbjct: 15 RSEGEEKTL 23>XP_005256151 Length = 293 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RSEASEKTM 9 RSE EKT+ Sbjct: 15 RSEGEEKTL 23>NP_060193 Length = 423 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RSEASEKT 8 R+EA EKT Sbjct: 253 RAEAEEKT 260>NP_001273359 Length = 606 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RSEASEKT 8 RSEASE++ Sbjct: 87 RSEASERS 94>NP_620147 Length = 666 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RSEASEKT 8 RSEASE++ Sbjct: 87 RSEASERS 94>NP_596870 Length = 5604 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSEASEK 7 RSEAS+K Sbjct: 3733 RSEASDK 3739>NP_659417 Length = 469 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSEASEK 7 RSE+SEK Sbjct: 372 RSESSEK 378>XP_006715416 Length = 501 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSEASEK 7 RSE+SEK Sbjct: 372 RSESSEK 378>XP_006715415 Length = 501 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSEASEK 7 RSE+SEK Sbjct: 372 RSESSEK 378>XP_005266895 Length = 501 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RSEASEK 7 RSE+SEK Sbjct: 372 RSESSEK 378Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.283 0.0937 0.201 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 326,404 Number of extensions: 432 Number of successful extensions: 20 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 20 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |