Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245202 19 665 NP_001245200 19 665 NP_001161091 19 665 NP_000240 19 665 NP_001161090 19 665 NP_001161089 19 665 NP_001245203 19 665 XP_005265223 19 665 XP_005265221 19 665 XP_005265220 19 665 XP_005265218 19 665 NP_001005619 17 4312 NP_001005731 17 4312 NP_000204 17 4312 XP_005257369 17 4312 XP_005257368 17 4312 XP_006721933 17 4312 XP_006721932 17 4312 XP_006721931 17 4312 XP_006721930 17 4312 XP_005257366 17 4312 XP_006721929 17 4312 NP_775899 16 5631 NP_001121683 16 7355 NP_116258 16 7355 XP_006717206 16 7355 XP_005252108 16 7355 NP_005383 16 7355 NP_619639 15 9605 NP_733842 15 9605 NP_115649 15 9605 NP_002896 15 9605 NP_690621 15 9605 NP_690620 15 9605 NP_690619 15 9605 NP_061180 15 9605 NP_002812 15 9605 NP_001257327 15 9605 NP_001186700 15 9605 XP_006716661 15 9605>NP_001245202 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 256 RRRIINLT 263>NP_001245200 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 497 RRRIINLT 504>NP_001161091 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 256 RRRIINLT 263>NP_000240 Length = 756 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 497 RRRIINLT 504>NP_001161090 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 256 RRRIINLT 263>NP_001161089 Length = 658 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 399 RRRIINLT 406>NP_001245203 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 256 RRRIINLT 263>XP_005265223 Length = 415 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 156 RRRIINLT 163>XP_005265221 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 256 RRRIINLT 263>XP_005265220 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 256 RRRIINLT 263>XP_005265218 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 RRRIINLT Sbjct: 428 RRRIINLT 435>NP_001005619 Length = 1805 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 976 RRLVNITI 983>NP_001005731 Length = 1752 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 976 RRLVNITI 983>NP_000204 Length = 1822 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 976 RRLVNITI 983>XP_005257369 Length = 1752 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 976 RRLVNITI 983>XP_005257368 Length = 1875 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 976 RRLVNITI 983>XP_006721933 Length = 1787 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 1011 RRLVNITI 1018>XP_006721932 Length = 1821 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 922 RRLVNITI 929>XP_006721931 Length = 1840 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 1011 RRLVNITI 1018>XP_006721930 Length = 1857 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 1011 RRLVNITI 1018>XP_005257366 Length = 1875 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 976 RRLVNITI 983>XP_006721929 Length = 1910 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RRIINLTV 9 RR++N+T+ Sbjct: 1011 RRLVNITI 1018>NP_775899 Length = 4462 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 ++R+INLT Sbjct: 3700 KQRVINLT 3707>NP_001121683 Length = 554 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RIINLTV 9 RI+NLTV Sbjct: 54 RIMNLTV 60>NP_116258 Length = 583 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RIINLTV 9 RI+NLTV Sbjct: 83 RIMNLTV 89>XP_006717206 Length = 1062 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 R+R++N+T Sbjct: 186 RKRVLNVT 193>XP_005252108 Length = 1097 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 R+R++N+T Sbjct: 186 RKRVLNVT 193>NP_005383 Length = 1096 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 RRRIINLT 8 R+R++N+T Sbjct: 186 RKRVLNVT 193>NP_619639 Length = 4074 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RIINLTV 9 RI+N+TV Sbjct: 1081 RIVNVTV 1087>NP_733842 Length = 3396 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RIINLTV 9 RI+N+TV Sbjct: 1081 RIVNVTV 1087>NP_115649 Length = 195 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 RRIINLT 8 RRI+N+T Sbjct: 55 RRILNVT 61>NP_002896 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RRRIINLT 8 R R+IN+T Sbjct: 155 RGRVINIT 162>NP_690621 Length = 1014 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RRRIINLTV 9 RR+ +N+TV Sbjct: 400 RRQDVNITV 408>NP_690620 Length = 940 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RRRIINLTV 9 RR+ +N+TV Sbjct: 400 RRQDVNITV 408>NP_690619 Length = 1030 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RRRIINLTV 9 RR+ +N+TV Sbjct: 400 RRQDVNITV 408>NP_061180 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RRIINL 7 RRIINL Sbjct: 122 RRIINL 127>NP_002812 Length = 1070 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RRRIINLTV 9 RR+ +N+TV Sbjct: 400 RRQDVNITV 408>NP_001257327 Length = 1078 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RRRIINLTV 9 RR+ +N+TV Sbjct: 408 RRQDVNITV 416>NP_001186700 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RRRIINLT 8 R R+IN+T Sbjct: 155 RGRVINIT 162>XP_006716661 Length = 166 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 RRIINL 7 RRIINL Sbjct: 122 RRIINL 127Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.346 0.155 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 396,138 Number of extensions: 447 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |