Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004662 17 3301 NP_775298 17 3301 NP_061330 17 3301 XP_006722636 17 3301 XP_005258440 17 3301 XP_005258439 17 3301 XP_005258438 17 3301 XP_005258436 17 3301 XP_005258434 17 3301 XP_006722635 17 3301 XP_006722634 17 3301 NP_998814 17 4312 XP_006717688 17 4312 XP_005269582 17 4312 NP_001240311 16 5631 NP_001240308 16 5631 NP_001240309 16 5631 NP_001240313 16 5631 NP_002939 16 5631 NP_001240312 16 5631 NP_037417 16 7355 NP_060417 15 9605 NP_149416 15 9605>NP_004662 Length = 621 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 168 QSSIQRF 174>NP_775298 Length = 572 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 168 QSSIQRF 174>NP_061330 Length = 511 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RQSSVQRFL 9 RQS +Q+F+ Sbjct: 170 RQSEIQKFI 178>XP_006722636 Length = 611 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 207 QSSIQRF 213>XP_005258440 Length = 613 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 159 QSSIQRF 165>XP_005258439 Length = 613 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 159 QSSIQRF 165>XP_005258438 Length = 613 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 159 QSSIQRF 165>XP_005258436 Length = 622 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 168 QSSIQRF 174>XP_005258434 Length = 626 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 172 QSSIQRF 178>XP_006722635 Length = 660 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 207 QSSIQRF 213>XP_006722634 Length = 661 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 QSSVQRF 8 QSS+QRF Sbjct: 207 QSSIQRF 213>NP_998814 Length = 337 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQSSVQRFL 9 RQS ++RFL Sbjct: 36 RQSFIRRFL 44>XP_006717688 Length = 314 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQSSVQRFL 9 RQS ++RFL Sbjct: 36 RQSFIRRFL 44>XP_005269582 Length = 328 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQSSVQRFL 9 RQS ++RFL Sbjct: 36 RQSFIRRFL 44>NP_001240311 Length = 204 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RQSSVQRFL 9 +QS V RFL Sbjct: 14 KQSDVMRFL 22>NP_001240308 Length = 204 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RQSSVQRFL 9 +QS V RFL Sbjct: 14 KQSDVMRFL 22>NP_001240309 Length = 204 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RQSSVQRFL 9 +QS V RFL Sbjct: 14 KQSDVMRFL 22>NP_001240313 Length = 145 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RQSSVQRFL 9 +QS V RFL Sbjct: 14 KQSDVMRFL 22>NP_002939 Length = 204 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RQSSVQRFL 9 +QS V RFL Sbjct: 14 KQSDVMRFL 22>NP_001240312 Length = 204 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RQSSVQRFL 9 +QS V RFL Sbjct: 14 KQSDVMRFL 22>NP_037417 Length = 731 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RQSSVQRF 8 +QSS+Q+F Sbjct: 88 KQSSLQKF 95>NP_060417 Length = 888 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 RQSSVQRF 8 RQS QRF Sbjct: 308 RQSVAQRF 315>NP_149416 Length = 354 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RQSSVQRFL 9 R SS+ RF+ Sbjct: 144 RYSSISRFM 152Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.132 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 280,752 Number of extensions: 240 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |