Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1135 NP_001035957 18 1135 XP_006721990 18 1135 XP_006721989 18 1135 XP_005258041 18 1135 XP_006721988 18 1135 XP_006721987 18 1135 XP_006721986 18 1135 XP_005258040 18 1135 XP_006721985 18 1135 NP_001186068 17 4312 NP_067032 17 4312 NP_001186067 17 4312 NP_001017535 16 5631 NP_000367 16 5631 NP_001017536 16 5631 NP_689418 16 5631 NP_001159716 16 5631 NP_001159718 16 5631 NP_068600 16 5631 NP_001159717 16 5631 NP_115545 16 5631 XP_006719650 16 5631 XP_006718000 16 5631 NP_062559 16 7355 XP_005256435 16 7355 XP_005256434 16 7355 XP_005264952 16 7355 NP_002728 15 9605 NP_065087 15 9605 NP_060569 15 9605 NP_056041 15 9605 NP_001258712 15 9605 NP_001230332 15 9605 XP_005255273 15 9605 XP_005255272 15 9605 XP_005255271 15 9605 XP_005255270 15 9605 XP_005255268 15 9605 XP_005255267 15 9605>NP_000258 Length = 2818 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1947 RQRVTAILD 1955>NP_001035957 Length = 2839 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1968 RQRVTAILD 1976>XP_006721990 Length = 2823 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1978 RQRVTAILD 1986>XP_006721989 Length = 2823 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1978 RQRVTAILD 1986>XP_005258041 Length = 2836 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1947 RQRVTAILD 1955>XP_006721988 Length = 2846 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1957 RQRVTAILD 1965>XP_006721987 Length = 2849 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1978 RQRVTAILD 1986>XP_006721986 Length = 2854 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1965 RQRVTAILD 1973>XP_005258040 Length = 2857 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1968 RQRVTAILD 1976>XP_006721985 Length = 2867 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV AILD Sbjct: 1978 RQRVTAILD 1986>NP_001186068 Length = 1024 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV+ +LD Sbjct: 240 RQRVLFLLD 248>NP_067032 Length = 1024 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV+ +LD Sbjct: 240 RQRVLFLLD 248>NP_001186067 Length = 1024 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQRV+ +LD Sbjct: 240 RQRVLFLLD 248>NP_001017535 Length = 427 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RQRVIAIL 8 +QR+IAIL Sbjct: 128 QQRIIAIL 135>NP_000367 Length = 427 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RQRVIAIL 8 +QR+IAIL Sbjct: 128 QQRIIAIL 135>NP_001017536 Length = 477 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RQRVIAIL 8 +QR+IAIL Sbjct: 178 QQRIIAIL 185>NP_689418 Length = 839 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 RQR++ I+D Sbjct: 254 RQRLVTIVD 262>NP_001159716 Length = 534 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 R+ VIA+LD Sbjct: 252 RKNVIALLD 260>NP_001159718 Length = 548 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 R+ VIA+LD Sbjct: 310 RKNVIALLD 318>NP_068600 Length = 592 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 R+ VIA+LD Sbjct: 310 RKNVIALLD 318>NP_001159717 Length = 480 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 R+ VIA+LD Sbjct: 198 RKNVIALLD 206>NP_115545 Length = 780 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RVIAILD 9 RVIA+LD Sbjct: 236 RVIAVLD 242>XP_006719650 Length = 427 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RQRVIAIL 8 +QR+IAIL Sbjct: 128 QQRIIAIL 135>XP_006718000 Length = 420 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RQRVIAILD 9 R+ VIA+LD Sbjct: 138 RKNVIALLD 146>NP_062559 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RQRVIAILD 9 R R++ +LD Sbjct: 109 RDRIVVVLD 117>XP_005256435 Length = 292 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RQRVIAILD 9 R R++ +LD Sbjct: 57 RDRIVVVLD 65>XP_005256434 Length = 310 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RQRVIAILD 9 R R++ +LD Sbjct: 75 RDRIVVVLD 83>XP_005264952 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RQRVIAIL 8 R+RV+A+L Sbjct: 55 RERVLAVL 62>NP_002728 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QRVIAILD 9 +RV+A+LD Sbjct: 388 KRVLALLD 395>NP_065087 Length = 604 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RQRVIAILD 9 R+R + ILD Sbjct: 250 RRRTVGILD 258>NP_060569 Length = 515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RQRVIAILD 9 +QRV ILD Sbjct: 53 QQRVFQILD 61>NP_056041 Length = 1053 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QRVIAILD 9 QR+ A+LD Sbjct: 821 QRIAALLD 828>NP_001258712 Length = 515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RQRVIAILD 9 +QRV ILD Sbjct: 53 QQRVFQILD 61>NP_001230332 Length = 906 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QRVIAILD 9 QR+ A+LD Sbjct: 803 QRIAALLD 810>XP_005255273 Length = 884 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QRVIAILD 9 QR+ A+LD Sbjct: 821 QRIAALLD 828>XP_005255272 Length = 925 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QRVIAILD 9 QR+ A+LD Sbjct: 821 QRIAALLD 828>XP_005255271 Length = 998 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QRVIAILD 9 QR+ A+LD Sbjct: 821 QRIAALLD 828>XP_005255270 Length = 1035 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QRVIAILD 9 QR+ A+LD Sbjct: 803 QRIAALLD 810>XP_005255268 Length = 1037 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QRVIAILD 9 QR+ A+LD Sbjct: 805 QRIAALLD 812>XP_005255267 Length = 1051 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QRVIAILD 9 QR+ A+LD Sbjct: 819 QRIAALLD 826Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.154 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 356,276 Number of extensions: 515 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |