Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001185761 18 1482 NP_071754 18 1482 NP_001185763 18 1482 NP_001002810 18 1482 NP_055459 18 1482 NP_001182189 18 1482 NP_001002812 18 1482 NP_001182190 18 1482 XP_006711719 18 1482 XP_006711717 18 1482 XP_006711716 18 1482 XP_006711715 18 1482 XP_006711714 18 1482 XP_006711713 18 1482 XP_006711710 18 1482 XP_006711709 18 1482 NP_060719 16 5631 NP_001258968 16 5631 NP_001011649 16 5631 NP_060066 16 5631 NP_001239029 16 5631 NP_001239032 16 5631 NP_001239031 16 5631 XP_006717248 16 5631 XP_006717247 16 5631 XP_006717246 16 5631 XP_006717245 16 5631 XP_006717244 16 5631 XP_006717243 16 5631 XP_006717242 16 5631 NP_689879 15 9605 NP_001182740 15 9605 NP_689777 15 9605 NP_060360 15 9605 NP_060103 15 9605 XP_005250858 15 9605 XP_005250857 15 9605 XP_006711815 15 9605 NP_443175 15 9605 NP_060179 15 9605>NP_001185761 Length = 2240 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 113 RNIELKVEV 121>NP_071754 Length = 310 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 184 RNIELKVEV 192>NP_001185763 Length = 2362 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 47 RNIELKVEV 55>NP_001002810 Length = 173 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 47 RNIELKVEV 55>NP_055459 Length = 2346 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 47 RNIELKVEV 55>NP_001182189 Length = 141 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 15 RNIELKVEV 23>NP_001002812 Length = 969 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 47 RNIELKVEV 55>NP_001182190 Length = 176 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 50 RNIELKVEV 58>XP_006711719 Length = 2302 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 113 RNIELKVEV 121>XP_006711717 Length = 2385 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 113 RNIELKVEV 121>XP_006711716 Length = 2411 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 113 RNIELKVEV 121>XP_006711715 Length = 2428 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 47 RNIELKVEV 55>XP_006711714 Length = 2429 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 47 RNIELKVEV 55>XP_006711713 Length = 2432 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 50 RNIELKVEV 58>XP_006711710 Length = 2494 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 113 RNIELKVEV 121>XP_006711709 Length = 2495 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNIELKV V Sbjct: 113 RNIELKVEV 121>NP_060719 Length = 1893 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 103 NIELKVEV 110>NP_001258968 Length = 1663 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 103 NIELKVEV 110>NP_001011649 Length = 1814 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 103 NIELKVEV 110>NP_060066 Length = 1624 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNI+ KVVV Sbjct: 368 RNIKNKVVV 376>NP_001239029 Length = 1637 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNI+ KVVV Sbjct: 368 RNIKNKVVV 376>NP_001239032 Length = 1610 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNI+ KVVV Sbjct: 368 RNIKNKVVV 376>NP_001239031 Length = 1623 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RNIELKVVV 9 RNI+ KVVV Sbjct: 368 RNIKNKVVV 376>XP_006717248 Length = 1664 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 103 NIELKVEV 110>XP_006717247 Length = 1670 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 103 NIELKVEV 110>XP_006717246 Length = 1820 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 103 NIELKVEV 110>XP_006717245 Length = 1861 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 103 NIELKVEV 110>XP_006717244 Length = 1867 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 103 NIELKVEV 110>XP_006717243 Length = 1889 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 93 NIELKVEV 100>XP_006717242 Length = 1898 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NIELKVVV 9 NIELKV V Sbjct: 102 NIELKVEV 109>NP_689879 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RNIELKVV 8 +NIE+K+V Sbjct: 179 QNIEIKLV 186>NP_001182740 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RNIELKVV 8 +NIE+K+V Sbjct: 117 QNIEIKLV 124>NP_689777 Length = 3997 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RNIELKVV 8 ++IELKVV Sbjct: 2714 QSIELKVV 2721>NP_060360 Length = 4022 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RNIELKVV 8 ++IELKVV Sbjct: 2739 QSIELKVV 2746>NP_060103 Length = 442 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RNIELKVV 8 +N+ELK V Sbjct: 212 KNVELKFV 219>XP_005250858 Length = 4022 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RNIELKVV 8 ++IELKVV Sbjct: 2739 QSIELKVV 2746>XP_005250857 Length = 4022 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RNIELKVV 8 ++IELKVV Sbjct: 2739 QSIELKVV 2746>XP_006711815 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RNIELKVV 8 +NIE+K+V Sbjct: 179 QNIEIKLV 186>NP_443175 Length = 425 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RNIELKVV 8 +N+ELK V Sbjct: 198 KNVELKFV 205>NP_060179 Length = 391 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RNIELKVV 8 +N+ELK V Sbjct: 163 KNVELKFV 170Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.145 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 355,005 Number of extensions: 442 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |