Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001138389 18 1482 NP_001138390 18 1482 NP_001138386 18 1482 NP_001138387 18 1482 NP_000132 18 1482 NP_075259 18 1482 NP_001138388 18 1482 NP_001138391 18 1482 NP_001138385 18 1482 NP_075418 18 1482 NP_001157570 18 1482 NP_004376 18 1482 XP_006717776 18 1482 XP_006717775 18 1482 XP_006717774 18 1482 XP_006717773 18 1482 XP_006717772 18 1482 XP_006717771 18 1482 NP_001191355 18 1935 NP_002305 18 1935 NP_005567 17 3301 NP_079527 17 3301 XP_006716724 17 3301 XP_005272401 17 3301 NP_004494 17 4312 NP_060478 16 5631 NP_056311 16 5631 NP_003059 16 7355 NP_057624 16 7355 NP_001273755 16 7355 NP_056498 16 7355 NP_001050 15 9605 NP_065076 15 9605 NP_056542 15 9605 NP_001106853 15 9605 NP_001092286 15 9605 NP_001048 15 9605 NP_001049 15 9605 NP_997069 15 9605 XP_006723662 15 9605 XP_005260825 15 9605 XP_006723661 15 9605 XP_006718561 15 9605 XP_006712889 15 9605>NP_001138389 Length = 705 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 334 RLSSTADTP 342>NP_001138390 Length = 704 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 333 RLSSTADTP 341>NP_001138386 Length = 709 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 338 RLSSTADTP 346>NP_001138387 Length = 707 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 361 RLSSTADTP 369>NP_000132 Length = 821 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 450 RLSSTADTP 458>NP_075259 Length = 822 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 451 RLSSTADTP 459>NP_001138388 Length = 706 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 335 RLSSTADTP 343>NP_001138391 Length = 680 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 362 RLSSTADTP 370>NP_001138385 Length = 769 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 451 RLSSTADTP 459>NP_075418 Length = 732 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 361 RLSSTADTP 369>NP_001157570 Length = 1642 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSTAYTP 9 LSSTA+TP Sbjct: 1049 LSSTAWTP 1056>NP_004376 Length = 3396 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSTAYTP 9 LSSTA+TP Sbjct: 1049 LSSTAWTP 1056>XP_006717776 Length = 806 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 469 RLSSTADTP 477>XP_006717775 Length = 726 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 355 RLSSTADTP 363>XP_006717774 Length = 752 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 381 RLSSTADTP 389>XP_006717773 Length = 807 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 470 RLSSTADTP 478>XP_006717772 Length = 838 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 467 RLSSTADTP 475>XP_006717771 Length = 839 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLSSTAYTP 9 RLSSTA TP Sbjct: 468 RLSSTADTP 476>NP_001191355 Length = 613 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 LSS AYTP Sbjct: 239 LSSPAYTP 246>NP_002305 Length = 647 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 LSS AYTP Sbjct: 273 LSSPAYTP 280>NP_005567 Length = 574 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 L+STAY P Sbjct: 402 LASTAYAP 409>NP_079527 Length = 1114 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 LSST Y+P Sbjct: 482 LSSTGYSP 489>XP_006716724 Length = 970 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 LSST Y+P Sbjct: 338 LSSTGYSP 345>XP_005272401 Length = 1083 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 LSST Y+P Sbjct: 482 LSSTGYSP 489>NP_004494 Length = 235 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 L+STAY P Sbjct: 26 LNSTAYDP 33>NP_060478 Length = 459 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 L STAY P Sbjct: 175 LDSTAYPP 182>NP_056311 Length = 1812 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 LSST Y P Sbjct: 1758 LSSTGYRP 1765>NP_003059 Length = 268 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 LSS AY+P Sbjct: 48 LSSGAYSP 55>NP_057624 Length = 423 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 +SST Y P Sbjct: 335 MSSTCYNP 342>NP_001273755 Length = 406 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SSTAYT 8 SSTAYT Sbjct: 67 SSTAYT 72>NP_056498 Length = 407 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SSTAYT 8 SSTAYT Sbjct: 67 SSTAYT 72>NP_001050 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 +SST Y P Sbjct: 346 MSSTMYNP 353>NP_065076 Length = 1873 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 LSST Y P Sbjct: 1325 LSSTDYDP 1332>NP_056542 Length = 311 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 +SST Y P Sbjct: 295 MSSTMYNP 302>NP_001106853 Length = 2093 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 +SST Y+P Sbjct: 540 VSSTPYSP 547>NP_001092286 Length = 2769 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 SSTAYTP 9 SST Y+P Sbjct: 307 SSTVYSP 313>NP_001048 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 +SST Y P Sbjct: 297 MSSTMYNP 304>NP_001049 Length = 407 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 +SST Y P Sbjct: 295 MSSTMYNP 302>NP_997069 Length = 315 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 LSST TP Sbjct: 277 LSSTVVTP 284>XP_006723662 Length = 1920 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 LSST Y P Sbjct: 1372 LSSTDYDP 1379>XP_005260825 Length = 1923 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 LSST Y P Sbjct: 1325 LSSTDYDP 1332>XP_006723661 Length = 1970 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LSSTAYTP 9 LSST Y P Sbjct: 1372 LSSTDYDP 1379>XP_006718561 Length = 2794 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 SSTAYTP 9 SST Y+P Sbjct: 332 SSTVYSP 338>XP_006712889 Length = 2069 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSSTAYTP 9 +SST Y+P Sbjct: 557 VSSTPYSP 564Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.114 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 422,283 Number of extensions: 542 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |